Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2459657..2460174 | Replicon | chromosome |
| Accession | NZ_AP027135 | ||
| Organism | Staphylococcus aureus strain JP089 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | QMM73_RS12325 | Protein ID | WP_000113262.1 |
| Coordinates | 2459657..2459923 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | QMM73_RS12330 | Protein ID | WP_061838810.1 |
| Coordinates | 2459923..2460174 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMM73_RS12295 (2455085) | 2455085..2455621 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| QMM73_RS12300 (2455855) | 2455855..2456679 | - | 825 | WP_000572040.1 | formate/nitrite transporter family protein | - |
| QMM73_RS12305 (2456896) | 2456896..2457078 | - | 183 | WP_000230294.1 | hypothetical protein | - |
| QMM73_RS12310 (2457162) | 2457162..2457629 | - | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
| QMM73_RS12315 (2457815) | 2457815..2459362 | - | 1548 | WP_061838809.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| QMM73_RS12320 (2459551) | 2459551..2459622 | - | 72 | Protein_2381 | hypothetical protein | - |
| QMM73_RS12325 (2459657) | 2459657..2459923 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| QMM73_RS12330 (2459923) | 2459923..2460174 | - | 252 | WP_061838810.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| QMM73_RS12335 (2460339) | 2460339..2460440 | - | 102 | Protein_2384 | hypothetical protein | - |
| QMM73_RS12340 (2460447) | 2460447..2461046 | - | 600 | WP_061838811.1 | DsbA family protein | - |
| QMM73_RS12345 (2461065) | 2461065..2461427 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| QMM73_RS12350 (2461682) | 2461682..2462932 | + | 1251 | WP_061838812.1 | FemA/FemB family glycyltransferase FmhA | - |
| QMM73_RS12355 (2463029) | 2463029..2463760 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| QMM73_RS12360 (2463757) | 2463757..2464476 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T43006 WP_000113262.1 NZ_AP027135:c2459923-2459657 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T43006 NZ_AP027135:c2459923-2459657 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9463.63 Da Isoelectric Point: 4.3407
>AT43006 WP_061838810.1 NZ_AP027135:c2460174-2459923 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSITDLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSITDLERGKTITKD
IDV
Download Length: 252 bp
>AT43006 NZ_AP027135:c2460174-2459923 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTACAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTACAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|