Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1490274..1490791 Replicon chromosome
Accession NZ_AP026708
Organism Pseudodesulfovibrio portus strain JCM 14722

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag OO730_RS07210 Protein ID WP_264983907.1
Coordinates 1490274..1490534 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag OO730_RS07215 Protein ID WP_264983908.1
Coordinates 1490534..1490791 (-) Length 86 a.a.

Genomic Context

OO730_RS07185OO730_RS07190OO730_RS07195OO730_RS07200OO730_RS07205OO730_RS07210OO730_RS07215OO730_RS07220OO730_RS07225OO730_RS07230OO730_RS07235OO730_RS07240OO730_RS07245
Location: 1486149..1486700 (552 bp)
Type: Others
Protein ID: WP_264983902.1
Location: 1486716..1487507 (792 bp)
Type: Others
Protein ID: WP_264983903.1
Location: 1487557..1487859 (303 bp)
Type: Others
Protein ID: WP_264983904.1
Location: 1487863..1489647 (1785 bp)
Type: Others
Protein ID: WP_264983905.1
Location: 1489651..1490133 (483 bp)
Type: Others
Protein ID: WP_264983906.1
Location: 1490274..1490534 (261 bp)
Type: Toxin
Protein ID: WP_264983907.1
Location: 1490534..1490791 (258 bp)
Type: Antitoxin
Protein ID: WP_264983908.1
Location: 1490883..1491524 (642 bp)
Type: Others
Protein ID: WP_264983909.1
Location: 1491769..1492119 (351 bp)
Type: Others
Protein ID: WP_264983910.1
Location: 1492137..1493432 (1296 bp)
Type: Others
Protein ID: WP_264983911.1
Location: 1493429..1494028 (600 bp)
Type: Others
Protein ID: WP_264983912.1
Location: 1494041..1494274 (234 bp)
Type: Others
Protein ID: WP_015414977.1
Location: 1494379..1494618 (240 bp)
Type: Others
Protein ID: WP_264983913.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OO730_RS07185 (JCM14722_13910)1486149..1486700+552WP_264983902.1biotin transporter BioY-
OO730_RS07190 (JCM14722_13920)1486716..1487507+792WP_264983903.1PTS system mannose/fructose/sorbose family transporter subunit IID-
OO730_RS07195 (JCM14722_13930)1487557..1487859+303WP_264983904.1HPr family phosphocarrier protein-
OO730_RS07200 (JCM14722_13940)1487863..1489647+1785WP_264983905.1phosphoenolpyruvate--protein phosphotransferase-
OO730_RS07205 (JCM14722_13950)1489651..1490133+483WP_264983906.1SsrA-binding protein SmpB-
OO730_RS07210 (JCM14722_13960)1490274..1490534-261WP_264983907.1Txe/YoeB family addiction module toxinToxin
OO730_RS07215 (JCM14722_13970)1490534..1490791-258WP_264983908.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
OO730_RS07220 (JCM14722_13980)1490883..1491524-642WP_264983909.1ribonuclease HII-
OO730_RS07225 (JCM14722_13990)1491769..1492119-351WP_264983910.150S ribosomal protein L19-
OO730_RS07230 (JCM14722_14000)1492137..1493432-1296WP_264983911.1tRNA (guanosine(37)-N1)-methyltransferase TrmD-
OO730_RS07235 (JCM14722_14010)1493429..1494028-600WP_264983912.1ribosome maturation factor RimM-
OO730_RS07240 (JCM14722_14020)1494041..1494274-234WP_015414977.1KH domain-containing protein-
OO730_RS07245 (JCM14722_14030)1494379..1494618-240WP_264983913.130S ribosomal protein S16-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(4-74)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10593.12 Da        Isoelectric Point: 9.3150

>T42605 WP_264983907.1 NZ_AP026708:c1490534-1490274 [Pseudodesulfovibrio portus]
MRLTWTEHGWEDYLYWQKADKKMVKRINLLIRDALRTPFEGRGKPEPLRFDLTGYWSRRIDREHRLVYAYDSEADALIIA
QCRYHY

Download         Length: 261 bp

>T42605 NZ_AP026708:c1490534-1490274 [Pseudodesulfovibrio portus]
ATGCGCCTCACCTGGACCGAACACGGTTGGGAAGATTATCTGTATTGGCAGAAGGCCGACAAAAAGATGGTCAAGCGCAT
CAATCTGCTCATCCGGGACGCCCTGAGGACTCCCTTTGAAGGGCGGGGCAAGCCCGAACCGCTCCGTTTCGACCTCACCG
GCTACTGGTCCCGCCGCATCGACAGGGAACACCGCCTTGTCTACGCCTACGACAGCGAGGCGGACGCACTGATCATCGCC
CAATGCCGTTACCACTACTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9424.59 Da        Isoelectric Point: 4.4791

>AT42605 WP_264983908.1 NZ_AP026708:c1490791-1490534 [Pseudodesulfovibrio portus]
MPEAITYTDARQRLASTMDEVCDSHEPVIITRRKAKSVVMMSLEDYNSIAETAYLLGSPANADRLRASIRSAQAGELEEH
ALLED

Download         Length: 258 bp

>AT42605 NZ_AP026708:c1490791-1490534 [Pseudodesulfovibrio portus]
ATGCCCGAAGCCATCACCTACACCGATGCTCGTCAACGCCTGGCGTCCACCATGGACGAGGTGTGCGATTCGCATGAGCC
CGTGATCATCACGCGGCGCAAGGCAAAGTCTGTGGTCATGATGTCCCTGGAAGACTATAATTCGATCGCTGAAACGGCGT
ATCTGCTAGGCAGCCCGGCCAATGCCGACCGGTTGCGTGCGTCAATCCGTTCCGCCCAGGCGGGGGAGCTTGAAGAACAC
GCGCTCCTGGAGGACTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References