41902

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symE-agrB/SymE(toxin)
Location 5368956..5369368 Replicon chromosome
Accession NZ_AP026085
Organism Escherichia coli strain H52_982342

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag OO840_RS26655 Protein ID WP_000132630.1
Coordinates 5368956..5369297 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name agrB
Locus tag -
Coordinates 5369292..5369368 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OO840_RS26635 (5364967) 5364967..5366379 - 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -
OO840_RS26640 (5366556) 5366556..5366720 + 165 WP_000394274.1 DUF1127 domain-containing protein -
OO840_RS26645 (5366817) 5366817..5367698 + 882 WP_001304007.1 DUF262 domain-containing protein -
OO840_RS26650 (5367746) 5367746..5368909 + 1164 WP_001304006.1 DUF1524 domain-containing protein -
OO840_RS26655 (5368956) 5368956..5369297 - 342 WP_000132630.1 endoribonuclease SymE Toxin
- (5369292) 5369292..5369368 + 77 NuclAT_14 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_14 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_14 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_14 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_15 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_15 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_15 - Antitoxin
- (5369292) 5369292..5369368 + 77 NuclAT_15 - Antitoxin
OO840_RS26660 (5369518) 5369518..5371272 - 1755 WP_000110082.1 restriction endonuclease subunit S -
OO840_RS26665 (5371272) 5371272..5372741 - 1470 WP_001302468.1 type I restriction-modification system subunit M -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 5358474..5377169 18695


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T41902 WP_000132630.1 NZ_AP026085:c5369297-5368956 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T41902 NZ_AP026085:c5369297-5368956 [Escherichia coli]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Antitoxin


Download         Length: 77 bp

>AT41902 NZ_AP026085:5369292-5369368 [Escherichia coli]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0

Antitoxin

Download structure file

References