Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3858035..3858710 Replicon chromosome
Accession NZ_AP025895
Organism Enterobacter hormaechei strain FUJ80191

Toxin (Protein)


Gene name higB Uniprot ID A0A837FDC1
Locus tag NGK38_RS18625 Protein ID WP_015571638.1
Coordinates 3858035..3858334 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A2J0PXC9
Locus tag NGK38_RS18630 Protein ID WP_015571639.1
Coordinates 3858345..3858710 (+) Length 122 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NGK38_RS18615 (FJMB80191_36540) 3854412..3856604 + 2193 WP_032649255.1 type I secretion system permease/ATPase -
NGK38_RS18620 (FJMB80191_36550) 3856585..3857784 + 1200 WP_017382757.1 HlyD family efflux transporter periplasmic adaptor subunit -
NGK38_RS18625 3858035..3858334 + 300 WP_015571638.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NGK38_RS18630 (FJMB80191_36560) 3858345..3858710 + 366 WP_015571639.1 HigA family addiction module antitoxin Antitoxin
NGK38_RS18635 (FJMB80191_36570) 3858737..3859918 - 1182 WP_017382758.1 PLP-dependent aminotransferase family protein -
NGK38_RS18640 (FJMB80191_36580) 3859939..3860826 - 888 WP_015571641.1 LysR family transcriptional regulator -
NGK38_RS18645 (FJMB80191_36590) 3860924..3861526 + 603 WP_017382759.1 short chain dehydrogenase -
NGK38_RS18650 (FJMB80191_36600) 3861637..3863016 - 1380 WP_032649259.1 amidohydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-93)

Antitoxin

Cro/C1-type helix-turn-helix domain

(25-72)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11624.29 Da        Isoelectric Point: 9.6776

>T41589 WP_015571638.1 NZ_AP025895:3858035-3858334 [Enterobacter hormaechei]
MINHFRDQWLEDFFLYGRSSNVIPLNLETALARKLDIINAAMSHLDLRSPPGNMYEALSPPLKGYSSIRVNRQYRLVFRW
SEGKADDLYLSPHKYTQHK

Download         Length: 300 bp

>T41589 NZ_AP025895:3858035-3858334 [Enterobacter hormaechei]
ATGATTAATCATTTTCGGGATCAATGGCTTGAGGATTTTTTTCTCTACGGGAGATCGAGCAATGTTATTCCTTTGAATCT
GGAAACAGCGCTTGCAAGAAAGCTCGACATCATCAATGCGGCCATGTCGCACCTGGATTTACGATCGCCACCGGGCAATA
TGTATGAAGCATTGAGTCCTCCGTTGAAGGGATATTCCTCTATCCGGGTAAACAGACAATACAGGCTTGTATTTCGCTGG
TCAGAGGGAAAAGCAGACGATCTCTATCTCTCTCCACACAAGTACACGCAACACAAGTGA

Antitoxin


Download         Length: 122 a.a.        Molecular weight: 13705.73 Da        Isoelectric Point: 9.5936

>AT41589 WP_015571639.1 NZ_AP025895:3858345-3858710 [Enterobacter hormaechei]
MTLQQALRKPTTPGEVLQYEYLEPLNLKINDLAEMLNVHRNTVSALVNNNRKLTADMAIKLAKAFNTTIEFWLNLQLNVD
IWEAQSNSRTQEELSRIKTVAEVMAKRKSGKPDVTLHGNSA

Download         Length: 366 bp

>AT41589 NZ_AP025895:3858345-3858710 [Enterobacter hormaechei]
ATGACACTTCAACAGGCACTCCGCAAACCCACCACGCCGGGCGAGGTGTTGCAGTATGAGTATCTTGAACCGCTCAATCT
GAAAATCAACGATCTGGCAGAGATGCTAAATGTACACCGCAATACCGTAAGCGCGTTGGTCAATAACAATCGCAAACTTA
CTGCCGATATGGCGATCAAACTGGCAAAAGCCTTTAATACCACTATTGAATTTTGGCTGAACTTACAGCTAAACGTTGAT
ATCTGGGAAGCGCAATCTAACTCCCGCACGCAGGAGGAGTTAAGCCGGATAAAAACCGTTGCGGAAGTCATGGCGAAGCG
AAAATCCGGCAAGCCAGACGTTACCCTGCACGGGAACAGCGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A837FDC1

Antitoxin

Source ID Structure
AlphaFold DB A0A2J0PXC9

References