Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3856974..3857649 Replicon chromosome
Accession NZ_AP025859
Organism Enterobacter hormaechei strain FUJ80145

Toxin (Protein)


Gene name higB Uniprot ID A0A837FDC1
Locus tag NGJ45_RS18615 Protein ID WP_015571638.1
Coordinates 3856974..3857273 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A2J0PXC9
Locus tag NGJ45_RS18620 Protein ID WP_015571639.1
Coordinates 3857284..3857649 (+) Length 122 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NGJ45_RS18605 (FJMB80145_36480) 3853351..3855543 + 2193 WP_032649255.1 type I secretion system permease/ATPase -
NGJ45_RS18610 (FJMB80145_36490) 3855524..3856723 + 1200 WP_017382757.1 HlyD family efflux transporter periplasmic adaptor subunit -
NGJ45_RS18615 3856974..3857273 + 300 WP_015571638.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NGJ45_RS18620 (FJMB80145_36500) 3857284..3857649 + 366 WP_015571639.1 HigA family addiction module antitoxin Antitoxin
NGJ45_RS18625 (FJMB80145_36510) 3857676..3858857 - 1182 WP_017382758.1 PLP-dependent aminotransferase family protein -
NGJ45_RS18630 (FJMB80145_36520) 3858878..3859765 - 888 WP_015571641.1 LysR family transcriptional regulator -
NGJ45_RS18635 (FJMB80145_36530) 3859863..3860465 + 603 WP_017382759.1 short chain dehydrogenase -
NGJ45_RS18640 (FJMB80145_36540) 3860576..3861955 - 1380 WP_032649259.1 amidohydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-93)

Antitoxin

Cro/C1-type helix-turn-helix domain

(25-72)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11624.29 Da        Isoelectric Point: 9.6776

>T41419 WP_015571638.1 NZ_AP025859:3856974-3857273 [Enterobacter hormaechei]
MINHFRDQWLEDFFLYGRSSNVIPLNLETALARKLDIINAAMSHLDLRSPPGNMYEALSPPLKGYSSIRVNRQYRLVFRW
SEGKADDLYLSPHKYTQHK

Download         Length: 300 bp

>T41419 NZ_AP025859:3856974-3857273 [Enterobacter hormaechei]
ATGATTAATCATTTTCGGGATCAATGGCTTGAGGATTTTTTTCTCTACGGGAGATCGAGCAATGTTATTCCTTTGAATCT
GGAAACAGCGCTTGCAAGAAAGCTCGACATCATCAATGCGGCCATGTCGCACCTGGATTTACGATCGCCACCGGGCAATA
TGTATGAAGCATTGAGTCCTCCGTTGAAGGGATATTCCTCTATCCGGGTAAACAGACAATACAGGCTTGTATTTCGCTGG
TCAGAGGGAAAAGCAGACGATCTCTATCTCTCTCCACACAAGTACACGCAACACAAGTGA

Antitoxin


Download         Length: 122 a.a.        Molecular weight: 13705.73 Da        Isoelectric Point: 9.5936

>AT41419 WP_015571639.1 NZ_AP025859:3857284-3857649 [Enterobacter hormaechei]
MTLQQALRKPTTPGEVLQYEYLEPLNLKINDLAEMLNVHRNTVSALVNNNRKLTADMAIKLAKAFNTTIEFWLNLQLNVD
IWEAQSNSRTQEELSRIKTVAEVMAKRKSGKPDVTLHGNSA

Download         Length: 366 bp

>AT41419 NZ_AP025859:3857284-3857649 [Enterobacter hormaechei]
ATGACACTTCAACAGGCACTCCGCAAACCCACCACGCCGGGCGAGGTGTTGCAGTATGAGTATCTTGAACCGCTCAATCT
GAAAATCAACGATCTGGCAGAGATGCTAAATGTACACCGCAATACCGTAAGCGCGTTGGTCAATAACAATCGCAAACTTA
CTGCCGATATGGCGATCAAACTGGCAAAAGCCTTTAATACCACTATTGAATTTTGGCTGAACTTACAGCTAAACGTTGAT
ATCTGGGAAGCGCAATCTAACTCCCGCACGCAGGAGGAGTTAAGCCGGATAAAAACCGTTGCGGAAGTCATGGCGAAGCG
AAAATCCGGCAAGCCAGACGTTACCCTGCACGGGAACAGCGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A837FDC1

Antitoxin

Source ID Structure
AlphaFold DB A0A2J0PXC9

References