Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1989003..1989505 | Replicon | chromosome |
| Accession | NZ_AP025730 | ||
| Organism | Sphaerotilus sp. FB-5 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | - |
| Locus tag | NGK70_RS08745 | Protein ID | WP_251972863.1 |
| Coordinates | 1989251..1989505 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | NGK70_RS08740 | Protein ID | WP_251972862.1 |
| Coordinates | 1989003..1989254 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10222.79 Da Isoelectric Point: 9.3752
>T40675 WP_251972863.1 NZ_AP025730:1989251-1989505 [Sphaerotilus sp. FB-5]
MKLVFADAAWEDYLYWQKQDRKMVERINKLIRETQREPFEGVGKPEPLKHALAGFWSRRITEEHRMVYRVEGDALLIAQL
RYHY
MKLVFADAAWEDYLYWQKQDRKMVERINKLIRETQREPFEGVGKPEPLKHALAGFWSRRITEEHRMVYRVEGDALLIAQL
RYHY
Download Length: 255 bp
>T40675 NZ_AP025730:1989251-1989505 [Sphaerotilus sp. FB-5]
ATGAAGCTGGTCTTTGCGGACGCCGCATGGGAGGACTACCTCTATTGGCAGAAGCAGGACCGCAAGATGGTGGAGCGCAT
CAACAAGCTGATCCGCGAAACCCAGCGCGAGCCCTTTGAGGGCGTCGGCAAACCCGAGCCGCTGAAGCACGCGCTGGCCG
GCTTCTGGTCACGCCGCATCACCGAAGAGCACCGCATGGTCTACCGGGTCGAGGGCGACGCTTTGCTGATTGCGCAGTTG
CGGTATCACTATTGA
ATGAAGCTGGTCTTTGCGGACGCCGCATGGGAGGACTACCTCTATTGGCAGAAGCAGGACCGCAAGATGGTGGAGCGCAT
CAACAAGCTGATCCGCGAAACCCAGCGCGAGCCCTTTGAGGGCGTCGGCAAACCCGAGCCGCTGAAGCACGCGCTGGCCG
GCTTCTGGTCACGCCGCATCACCGAAGAGCACCGCATGGTCTACCGGGTCGAGGGCGACGCTTTGCTGATTGCGCAGTTG
CGGTATCACTATTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9134.26 Da Isoelectric Point: 4.4796
>AT40675 WP_251972862.1 NZ_AP025730:1989003-1989254 [Sphaerotilus sp. FB-5]
MDAISYSAARANLASTMDRVCNDHEPLIVTRNGQPSVVMLSLEDYQALEETAYLLRSPANARRLLSAVQQLSAGQGQERE
LVE
MDAISYSAARANLASTMDRVCNDHEPLIVTRNGQPSVVMLSLEDYQALEETAYLLRSPANARRLLSAVQQLSAGQGQERE
LVE
Download Length: 252 bp
>AT40675 NZ_AP025730:1989003-1989254 [Sphaerotilus sp. FB-5]
TTGGATGCCATTTCCTACTCGGCCGCGCGCGCCAACCTGGCCAGCACCATGGACCGCGTGTGCAACGACCATGAGCCGCT
GATCGTCACCCGCAACGGCCAGCCCTCGGTGGTGATGCTGTCGCTGGAGGACTACCAGGCGCTGGAGGAGACGGCCTACC
TGCTGCGCAGCCCCGCCAACGCCCGGCGGCTGCTCTCGGCCGTGCAACAGCTCTCGGCCGGCCAGGGCCAGGAGCGGGAG
CTGGTGGAATGA
TTGGATGCCATTTCCTACTCGGCCGCGCGCGCCAACCTGGCCAGCACCATGGACCGCGTGTGCAACGACCATGAGCCGCT
GATCGTCACCCGCAACGGCCAGCCCTCGGTGGTGATGCTGTCGCTGGAGGACTACCAGGCGCTGGAGGAGACGGCCTACC
TGCTGCGCAGCCCCGCCAACGCCCGGCGGCTGCTCTCGGCCGTGCAACAGCTCTCGGCCGGCCAGGGCCAGGAGCGGGAG
CTGGTGGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|