Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2445097..2445614 | Replicon | chromosome |
| Accession | NZ_AP025177 | ||
| Organism | Staphylococcus aureus strain TPS6281 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | - |
| Locus tag | CC22TP_RS12205 | Protein ID | WP_000113261.1 |
| Coordinates | 2445097..2445363 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | CC22TP_RS12210 | Protein ID | WP_000584499.1 |
| Coordinates | 2445363..2445614 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CC22TP_RS12175 (2440534) | 2440534..2441070 | - | 537 | WP_000169319.1 | GNAT family N-acetyltransferase | - |
| CC22TP_RS12180 (2441304) | 2441304..2442128 | - | 825 | WP_000594640.1 | formate/nitrite transporter family protein | - |
| CC22TP_RS12185 (2442331) | 2442331..2442513 | - | 183 | WP_000250735.1 | hypothetical protein | - |
| CC22TP_RS12190 (2442600) | 2442600..2443067 | - | 468 | WP_000153345.1 | SRPBCC domain-containing protein | - |
| CC22TP_RS12195 (2443253) | 2443253..2444803 | - | 1551 | WP_000727760.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| CC22TP_RS12200 (2444991) | 2444991..2445062 | - | 72 | WP_223200558.1 | hypothetical protein | - |
| CC22TP_RS12205 (2445097) | 2445097..2445363 | - | 267 | WP_000113261.1 | Txe/YoeB family addiction module toxin | Toxin |
| CC22TP_RS12210 (2445363) | 2445363..2445614 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| CC22TP_RS12215 (2445777) | 2445777..2445878 | - | 102 | Protein_2364 | hypothetical protein | - |
| CC22TP_RS12220 (2445885) | 2445885..2446484 | - | 600 | WP_103204748.1 | DsbA family protein | - |
| CC22TP_RS12225 (2446503) | 2446503..2446865 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| CC22TP_RS12230 (2447120) | 2447120..2448370 | + | 1251 | WP_001012231.1 | FemA/FemB family glycyltransferase FmhA | - |
| CC22TP_RS12235 (2448455) | 2448455..2449186 | - | 732 | WP_000615455.1 | amino acid ABC transporter ATP-binding protein | - |
| CC22TP_RS12240 (2449183) | 2449183..2449902 | - | 720 | WP_000479573.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10452.02 Da Isoelectric Point: 10.0373
>T40015 WP_000113261.1 NZ_AP025177:c2445363-2445097 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDKHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDKHIK
IASCKYHY
Download Length: 267 bp
>T40015 NZ_AP025177:c2445363-2445097 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAAGCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAAGCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT40015 WP_000584499.1 NZ_AP025177:c2445614-2445363 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT40015 NZ_AP025177:c2445614-2445363 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAGCACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAGCACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|