38512

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 4346130..4346784 Replicon chromosome
Accession NZ_AP024503
Organism Pseudomonas protegens strain Go58

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag PproGo58_RS19065 Protein ID WP_207166232.1
Coordinates 4346130..4346480 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag PproGo58_RS19070 Protein ID WP_102864712.1
Coordinates 4346467..4346784 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PproGo58_RS19055 4342889..4344421 + 1533 WP_207166231.1 NADH-quinone oxidoreductase subunit M -
PproGo58_RS19060 4344429..4345892 + 1464 WP_015636299.1 NADH-quinone oxidoreductase subunit NuoN -
PproGo58_RS19065 4346130..4346480 + 351 WP_207166232.1 toxin Toxin
PproGo58_RS19070 4346467..4346784 + 318 WP_102864712.1 transcriptional regulator Antitoxin
PproGo58_RS19075 4346853..4348235 - 1383 WP_102864711.1 cysteine--tRNA ligase -
PproGo58_RS19080 4348254..4349954 - 1701 WP_102864710.1 glutamine--tRNA ligase/YqeY domain fusion protein -
PproGo58_RS19085 4350225..4350728 + 504 WP_016965727.1 peptidyl-prolyl cis-trans isomerase -
PproGo58_RS19090 4350725..4351477 + 753 WP_207166233.1 UDP-2,3-diacylglucosamine diphosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(48-101)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13966.06 Da        Isoelectric Point: 8.9805

>T38512 WP_207166232.1 NZ_AP024503:4346130-4346480 [Pseudomonas protegens]
MNALFIELPAFARYRKDFLDDELFCELQIELLRHPHAGVLIQGTGGLRKMRFVDERRNKGRRGGLRVVYYWWSGGAQFWL
FTLFDKEQMDDLLPQQRQQLKQLLEREIEARRHDQT

Download         Length: 351 bp

>T38512 NZ_AP024503:4346130-4346480 [Pseudomonas protegens]
ATGAATGCTCTGTTTATTGAACTACCGGCATTTGCACGATACCGAAAGGACTTCCTTGACGACGAGCTGTTCTGCGAACT
GCAGATCGAGTTGCTGCGCCACCCGCACGCAGGGGTTCTGATTCAGGGCACTGGCGGCTTGCGCAAGATGCGTTTCGTCG
ATGAGCGACGCAACAAGGGCAGGCGTGGCGGGCTGAGAGTGGTTTATTACTGGTGGTCCGGAGGGGCGCAGTTCTGGCTC
TTCACCCTGTTCGACAAGGAGCAGATGGACGACCTGCTACCGCAGCAGCGACAACAGCTCAAACAACTGCTGGAACGTGA
AATCGAGGCCAGAAGACATGACCAAACGTGA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 12086.93 Da        Isoelectric Point: 10.4439

>AT38512 WP_102864712.1 NZ_AP024503:4346467-4346784 [Pseudomonas protegens]
MTKRDIFSELVEGIDALTQERQGKITLRSHKVKLDKLPPITATEVMNIRQQLNLSRSVFAMYLRTNTRTLENWEQGRATP
NAQATTLMRLVERYPDTVERLASLA

Download         Length: 318 bp

>AT38512 NZ_AP024503:4346467-4346784 [Pseudomonas protegens]
ATGACCAAACGTGACATCTTTTCCGAACTGGTAGAAGGCATCGACGCCCTCACCCAGGAACGCCAGGGCAAGATCACCCT
GCGCAGCCATAAAGTGAAGCTGGACAAACTGCCCCCCATCACTGCCACCGAGGTGATGAACATCCGCCAGCAACTCAACC
TCTCGCGCTCAGTATTCGCCATGTACCTGCGGACCAACACCCGTACCCTGGAAAACTGGGAACAAGGCCGCGCCACACCC
AACGCCCAGGCCACAACCTTGATGCGCCTGGTGGAACGCTACCCGGACACAGTGGAGCGCCTCGCCTCGCTGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References