Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-MqsA |
| Location | 1294998..1295631 | Replicon | chromosome |
| Accession | NZ_AP024165 | ||
| Organism | Vibrio alfacsensis strain 04Ya108 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A347UQS4 |
| Locus tag | VA249_RS06235 | Protein ID | WP_012600340.1 |
| Coordinates | 1294998..1295330 (+) | Length | 111 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | VA249_RS06240 | Protein ID | WP_017049537.1 |
| Coordinates | 1295317..1295631 (+) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA249_RS06185 | 1290669..1290782 | + | 114 | WP_104027845.1 | DUF3265 domain-containing protein | - |
| VA249_RS06190 (VYA_11340) | 1290821..1291336 | + | 516 | WP_221069380.1 | DUF1643 domain-containing protein | - |
| VA249_RS06195 (VYA_11350) | 1291452..1292048 | + | 597 | WP_221069382.1 | methyltransferase domain-containing protein | - |
| VA249_RS06200 (VYA_11360) | 1292289..1292486 | + | 198 | WP_054757413.1 | hypothetical protein | - |
| VA249_RS06205 | 1292541..1292630 | + | 90 | WP_072829120.1 | DUF3265 domain-containing protein | - |
| VA249_RS06210 | 1293149..1293238 | + | 90 | WP_074531724.1 | DUF3265 domain-containing protein | - |
| VA249_RS06215 | 1293265..1293828 | + | 564 | WP_221069384.1 | hypothetical protein | - |
| VA249_RS06220 | 1293849..1293941 | + | 93 | WP_193343211.1 | DUF3265 domain-containing protein | - |
| VA249_RS06225 (VYA_11380) | 1293976..1294782 | + | 807 | WP_221069394.1 | hypothetical protein | - |
| VA249_RS06230 | 1294803..1294895 | + | 93 | WP_080277110.1 | DUF3265 domain-containing protein | - |
| VA249_RS06235 (VYA_11390) | 1294998..1295330 | + | 333 | WP_012600340.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| VA249_RS06240 (VYA_11400) | 1295317..1295631 | + | 315 | WP_017049537.1 | DNA-binding transcriptional regulator | Antitoxin |
| VA249_RS06245 | 1295646..1295738 | + | 93 | WP_012841671.1 | DUF3265 domain-containing protein | - |
| VA249_RS06250 (VYA_11410) | 1295830..1296075 | + | 246 | WP_077261314.1 | hypothetical protein | - |
| VA249_RS06255 | 1296072..1296182 | + | 111 | WP_077262477.1 | DUF3265 domain-containing protein | - |
| VA249_RS06260 (VYA_11420) | 1296219..1297040 | + | 822 | WP_221069396.1 | phospholipase D-like domain-containing protein | - |
| VA249_RS06265 (VYA_11430) | 1297187..1297885 | + | 699 | WP_221069398.1 | hypothetical protein | - |
| VA249_RS06270 (VYA_11440) | 1298025..1298420 | + | 396 | WP_225927118.1 | GIY-YIG nuclease family protein | - |
| VA249_RS06275 | 1298457..1298546 | + | 90 | WP_079766072.1 | DUF3265 domain-containing protein | - |
| VA249_RS06280 (VYA_11450) | 1298673..1298960 | + | 288 | WP_017817947.1 | hypothetical protein | - |
| VA249_RS06285 (VYA_11460) | 1299145..1299744 | + | 600 | WP_221069402.1 | hypothetical protein | - |
| VA249_RS06290 | 1299771..1299863 | + | 93 | WP_213872838.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1225667..1320873 | 95206 | |
| - | inside | Integron | - | - | 1226253..1318506 | 92253 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 12906.76 Da Isoelectric Point: 10.0960
>T38063 WP_012600340.1 NZ_AP024165:1294998-1295330 [Vibrio alfacsensis]
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
Download Length: 333 bp
>T38063 NZ_AP024165:1294998-1295330 [Vibrio alfacsensis]
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATATCTTAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGCTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAATCGTGA
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATATCTTAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGCTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAATCGTGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11704.17 Da Isoelectric Point: 6.3290
>AT38063 WP_017049537.1 NZ_AP024165:1295317-1295631 [Vibrio alfacsensis]
MSNRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
MSNRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
Download Length: 315 bp
>AT38063 NZ_AP024165:1295317-1295631 [Vibrio alfacsensis]
ATGAGCAATCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAGGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATCGTGAGTATTCGAGAGCAGTTTAATA
TGTCTCGTGGTGTTTTTGCTCGTTTGTTGCACACATCATCTCGTACGTTAGAAAACTGGGAGCAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAGCGCCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
ATGAGCAATCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAGGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATCGTGAGTATTCGAGAGCAGTTTAATA
TGTCTCGTGGTGTTTTTGCTCGTTTGTTGCACACATCATCTCGTACGTTAGAAAACTGGGAGCAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAGCGCCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|