Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | mqsRA (relBE)/MqsR-MqsA |
Location | 2143988..2144687 | Replicon | chromosome |
Accession | NZ_AP023348 | ||
Organism | Pseudomonas sp. RtIB026 |
Toxin (Protein)
Gene name | mqsR | Uniprot ID | - |
Locus tag | PRtIB026_RS09725 | Protein ID | WP_203651799.1 |
Coordinates | 2143988..2144284 (+) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | mqsA | Uniprot ID | - |
Locus tag | PRtIB026_RS09730 | Protein ID | WP_203651800.1 |
Coordinates | 2144286..2144687 (+) | Length | 134 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PRtIB026_RS09705 | 2139987..2141165 | - | 1179 | WP_203651797.1 | efflux RND transporter periplasmic adaptor subunit | - |
PRtIB026_RS09710 | 2141382..2141858 | + | 477 | WP_186732870.1 | sigma-70 family RNA polymerase sigma factor | - |
PRtIB026_RS09715 | 2142031..2142515 | + | 485 | Protein_1896 | histidine kinase | - |
PRtIB026_RS09720 | 2142569..2143893 | + | 1325 | Protein_1897 | MFS transporter | - |
PRtIB026_RS09725 | 2143988..2144284 | + | 297 | WP_203651799.1 | type II toxin-antitoxin system MqsR family toxin | Toxin |
PRtIB026_RS09730 | 2144286..2144687 | + | 402 | WP_203651800.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin |
PRtIB026_RS09735 | 2144837..2146486 | + | 1650 | WP_203651801.1 | hypothetical protein | - |
PRtIB026_RS09740 | 2146550..2148214 | - | 1665 | WP_203651802.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
PRtIB026_RS09745 | 2148757..2149506 | + | 750 | WP_028692905.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11578.46 Da Isoelectric Point: 9.5783
>T37648 WP_203651799.1 NZ_AP023348:2143988-2144284 [Pseudomonas sp. RtIB026]
MEKRTPHCPLERVRMLMSQGRVRPTRTAIQDCDALGLSPRQMLEVVRGLSAHDFYKSMTTYHDHRIWQDVYRPRTVFGDL
YIKLTVVDDVLIVSFKER
MEKRTPHCPLERVRMLMSQGRVRPTRTAIQDCDALGLSPRQMLEVVRGLSAHDFYKSMTTYHDHRIWQDVYRPRTVFGDL
YIKLTVVDDVLIVSFKER
Download Length: 297 bp
>T37648 NZ_AP023348:2143988-2144284 [Pseudomonas sp. RtIB026]
ATGGAAAAGAGAACGCCGCACTGCCCGCTGGAAAGGGTGCGAATGTTGATGAGCCAGGGCCGGGTCAGGCCCACCCGGAC
AGCTATCCAGGACTGTGATGCGCTCGGGCTGAGCCCTCGCCAGATGCTTGAAGTCGTTCGAGGCTTGTCGGCACACGATT
TCTACAAAAGCATGACGACCTATCACGATCATCGGATCTGGCAGGATGTCTATCGTCCCCGAACCGTCTTTGGCGATCTC
TACATCAAGCTGACGGTGGTCGATGACGTGCTGATCGTGTCATTCAAGGAGCGTTGA
ATGGAAAAGAGAACGCCGCACTGCCCGCTGGAAAGGGTGCGAATGTTGATGAGCCAGGGCCGGGTCAGGCCCACCCGGAC
AGCTATCCAGGACTGTGATGCGCTCGGGCTGAGCCCTCGCCAGATGCTTGAAGTCGTTCGAGGCTTGTCGGCACACGATT
TCTACAAAAGCATGACGACCTATCACGATCATCGGATCTGGCAGGATGTCTATCGTCCCCGAACCGTCTTTGGCGATCTC
TACATCAAGCTGACGGTGGTCGATGACGTGCTGATCGTGTCATTCAAGGAGCGTTGA
Antitoxin
Download Length: 134 a.a. Molecular weight: 14682.85 Da Isoelectric Point: 5.7576
>AT37648 WP_203651800.1 NZ_AP023348:2144286-2144687 [Pseudomonas sp. RtIB026]
MKCPVCGGAELVAQAQDMPYRYNGHSTVIRDVFGDYCPVCGEAVLSMAEAERLGDLMLAFKRQVNAAAVDPAFIASVRRK
FDLDQREAGEIFGGGVNAFSRYENGKTQPPVALIKLFKLLDRHPELFEEVRTA
MKCPVCGGAELVAQAQDMPYRYNGHSTVIRDVFGDYCPVCGEAVLSMAEAERLGDLMLAFKRQVNAAAVDPAFIASVRRK
FDLDQREAGEIFGGGVNAFSRYENGKTQPPVALIKLFKLLDRHPELFEEVRTA
Download Length: 402 bp
>AT37648 NZ_AP023348:2144286-2144687 [Pseudomonas sp. RtIB026]
ATGAAGTGTCCCGTGTGTGGTGGTGCTGAGCTGGTCGCCCAGGCTCAGGACATGCCTTATCGATACAATGGCCATTCGAC
GGTGATCCGTGATGTCTTCGGCGATTATTGCCCTGTTTGCGGCGAGGCGGTGCTGAGCATGGCTGAAGCTGAGCGCCTCG
GTGATCTGATGCTGGCCTTCAAGCGACAGGTCAATGCCGCCGCTGTCGACCCTGCCTTCATTGCCAGCGTTCGGCGCAAA
TTCGACCTCGATCAGCGTGAGGCGGGCGAAATCTTTGGCGGCGGGGTCAATGCCTTTTCCCGTTACGAGAACGGCAAGAC
CCAACCACCGGTCGCACTGATCAAGCTGTTCAAGCTCCTGGATCGTCATCCGGAACTGTTCGAGGAAGTCAGGACTGCCT
GA
ATGAAGTGTCCCGTGTGTGGTGGTGCTGAGCTGGTCGCCCAGGCTCAGGACATGCCTTATCGATACAATGGCCATTCGAC
GGTGATCCGTGATGTCTTCGGCGATTATTGCCCTGTTTGCGGCGAGGCGGTGCTGAGCATGGCTGAAGCTGAGCGCCTCG
GTGATCTGATGCTGGCCTTCAAGCGACAGGTCAATGCCGCCGCTGTCGACCCTGCCTTCATTGCCAGCGTTCGGCGCAAA
TTCGACCTCGATCAGCGTGAGGCGGGCGAAATCTTTGGCGGCGGGGTCAATGCCTTTTCCCGTTACGAGAACGGCAAGAC
CCAACCACCGGTCGCACTGATCAAGCTGTTCAAGCTCCTGGATCGTCATCCGGAACTGTTCGAGGAAGTCAGGACTGCCT
GA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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