Detailed information of TA system TA032753

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/Txe-RelB
• Location: 2572128..2572645
• Replicon: chromosome
• Accession: NZ_AP019545
• Organism: Staphylococcus aureus strain KG-22

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: A0A3A3ATA4
• Locus tag: GDK20_RS13190
• Protein ID: WP_000113265.1
• Coordinates: 2572128..2572394 (-)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: T1YB60
• Locus tag: GDK20_RS13195
• Protein ID: WP_000584499.1
• Coordinates: 2572394..2572645 (-)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GDK20_RS13160	2567556..2568092	-	537	WP_000169317.1	GNAT family N-acetyltransferase	-
GDK20_RS13165	2568326..2569150	-	825	WP_000572038.1	formate/nitrite transporter family protein	-
GDK20_RS13170	2569367..2569549	-	183	WP_000230292.1	hypothetical protein	-
GDK20_RS13175	2569633..2570100	-	468	WP_000153347.1	SRPBCC domain-containing protein	-
GDK20_RS13180	2570286..2571833	-	1548	WP_000727772.1	zinc ABC transporter substrate-binding lipoprotein AdcA	-
GDK20_RS13185	2572022..2572093	-	72	Protein_2484	hypothetical protein	-
GDK20_RS13190	2572128..2572394	-	267	WP_000113265.1	Txe/YoeB family addiction module toxin	Toxin
GDK20_RS13195	2572394..2572645	-	252	WP_000584499.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
GDK20_RS13200	2572810..2572911	-	102	Protein_2487	hypothetical protein	-
GDK20_RS13205	2572918..2573517	-	600	WP_000162810.1	DsbA family protein	-
GDK20_RS13210	2573536..2573898	-	363	WP_000819843.1	DUF4467 domain-containing protein	-
GDK20_RS13215	2574153..2575403	+	1251	WP_001012225.1	FemA/FemB family glycyltransferase FmhA	-
GDK20_RS13220	2575500..2576231	-	732	WP_000615461.1	amino acid ABC transporter ATP-binding protein	-
GDK20_RS13225	2576228..2576947	-	720	WP_000479576.1	amino acid ABC transporter permease	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-81)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-74)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10436.96 Da
• Isoelectric Point: 10.0573

>T32753 WP_000113265.1 NZ_AP019545:c2572394-2572128 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Nucleotide

• Length: 267 bp

>T32753 NZ_AP019545:c2572394-2572128 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9433.60 Da
• Isoelectric Point: 4.3407

>AT32753 WP_000584499.1 NZ_AP019545:c2572645-2572394 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Nucleotide

• Length: 252 bp

>AT32753 NZ_AP019545:c2572645-2572394 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Structures

Toxin

• PDB: 7BWF

Antitoxin

• AlphaFold DB: T1YB60