Detailed information of TA system TA032580

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/Txe-RelB
• Location: 1172319..1172836
• Replicon: chromosome
• Accession: NZ_AP019305
• Organism: Staphylococcus aureus strain TUM9458

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: A0A3A3ATA4
• Locus tag: EKM72_RS06535
• Protein ID: WP_000113265.1
• Coordinates: 1172319..1172585 (-)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: T1YB60
• Locus tag: EKM72_RS06540
• Protein ID: WP_000584499.1
• Coordinates: 1172585..1172836 (-)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
EKM72_RS06505	1167747..1168283	-	537	WP_000169317.1	GNAT family N-acetyltransferase	-
EKM72_RS06510	1168517..1169341	-	825	WP_000572038.1	formate/nitrite transporter family protein	-
EKM72_RS06515	1169558..1169740	-	183	WP_000230292.1	hypothetical protein	-
EKM72_RS06520	1169824..1170291	-	468	WP_000153347.1	SRPBCC domain-containing protein	-
EKM72_RS06525	1170477..1172024	-	1548	WP_000727772.1	zinc ABC transporter substrate-binding lipoprotein AdcA	-
EKM72_RS06530	1172213..1172284	-	72	Protein_1196	hypothetical protein	-
EKM72_RS06535	1172319..1172585	-	267	WP_000113265.1	Txe/YoeB family addiction module toxin	Toxin
EKM72_RS06540	1172585..1172836	-	252	WP_000584499.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
EKM72_RS06545	1173001..1173102	-	102	Protein_1199	hypothetical protein	-
EKM72_RS06550	1173109..1173708	-	600	WP_000162810.1	DsbA family protein	-
EKM72_RS06555	1173727..1174089	-	363	WP_000819843.1	DUF4467 domain-containing protein	-
EKM72_RS06560	1174344..1175594	+	1251	WP_001012225.1	FemA/FemB family glycyltransferase FmhA	-
EKM72_RS06565	1175691..1176422	-	732	WP_000615461.1	amino acid ABC transporter ATP-binding protein	-
EKM72_RS06570	1176419..1177138	-	720	WP_000479576.1	amino acid ABC transporter permease	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-81)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-74)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10436.96 Da
• Isoelectric Point: 10.0573

>T32580 WP_000113265.1 NZ_AP019305:c1172585-1172319 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Nucleotide

• Length: 267 bp

>T32580 NZ_AP019305:c1172585-1172319 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9433.60 Da
• Isoelectric Point: 4.3407

>AT32580 WP_000584499.1 NZ_AP019305:c1172836-1172585 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Nucleotide

• Length: 252 bp

>AT32580 NZ_AP019305:c1172836-1172585 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Structures

Toxin

• PDB: 7BWF

Antitoxin

• AlphaFold DB: T1YB60