Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 355843..356399 Replicon chromosome
Accession NZ_AP019011
Organism Fluviibacter phosphoraccumulans strain SHINM1

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag SHINM1_RS01820 Protein ID WP_202930750.1
Coordinates 355843..356025 (+) Length 61 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag SHINM1_RS01825 Protein ID WP_162050402.1
Coordinates 356085..356399 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SHINM1_RS01790 (SHINM1_003420) 352279..353052 - 774 WP_162050976.1 sulfite exporter TauE/SafE family protein -
SHINM1_RS01795 (SHINM1_003430) 353168..354121 + 954 WP_162050406.1 CysB family HTH-type transcriptional regulator -
SHINM1_RS01800 (SHINM1_003440) 354208..354564 + 357 WP_162050405.1 30S ribosomal protein S6 -
SHINM1_RS01805 (SHINM1_003450) 354590..354892 + 303 WP_242451456.1 primosomal replication protein N -
SHINM1_RS01810 (SHINM1_003460) 354914..355201 + 288 WP_162050404.1 30S ribosomal protein S18 -
SHINM1_RS01815 (SHINM1_003470) 355207..355656 + 450 WP_162050403.1 50S ribosomal protein L9 -
SHINM1_RS01820 (SHINM1_003480) 355843..356025 + 183 WP_202930750.1 hypothetical protein Toxin
SHINM1_RS01825 (SHINM1_003490) 356085..356399 + 315 WP_162050402.1 transcriptional regulator Antitoxin
SHINM1_RS01830 (SHINM1_003500) 356463..358925 + 2463 WP_162050401.1 replicative DNA helicase -
SHINM1_RS01835 (SHINM1_003510) 358951..359550 - 600 WP_211149161.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(43-101)


Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 6815.79 Da        Isoelectric Point: 9.5057

>T32516 WP_202930750.1 NZ_AP019011:355843-356025 [Fluviibacter phosphoraccumulans]
MATPEAGDVIEGTGGLRKLRYADATRGKGKRGGLRVIYYWWVSGAQFWLFTLYNKDEMVD

Download         Length: 183 bp

>T32516 NZ_AP019011:355843-356025 [Fluviibacter phosphoraccumulans]
ATGGCTACGCCAGAAGCCGGTGATGTCATTGAAGGCACTGGCGGTCTTAGAAAGCTAAGGTATGCCGATGCGACTAGAGG
AAAAGGTAAGCGTGGCGGTCTGAGAGTAATTTACTACTGGTGGGTGTCTGGTGCGCAGTTCTGGCTATTTACGCTGTACA
ACAAAGATGAAATGGTGGATTGA

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11900.80 Da        Isoelectric Point: 10.9823

>AT32516 WP_162050402.1 NZ_AP019011:356085-356399 [Fluviibacter phosphoraccumulans]
MTKRNMFAELVEGFEALAEHREGKRTLRTHKVAAKAIDAIAPDELVRLRERLHLSRPVFATCLRTNPRTLENWEQGRAKP
NAQATVLIRLVEKFPDTVQRLASV

Download         Length: 315 bp

>AT32516 NZ_AP019011:356085-356399 [Fluviibacter phosphoraccumulans]
ATGACCAAAAGAAATATGTTTGCAGAGTTGGTAGAGGGGTTTGAAGCCTTGGCTGAGCACCGGGAGGGGAAGCGTACGCT
GCGAACCCATAAGGTTGCTGCAAAAGCGATCGACGCAATTGCGCCGGATGAGCTCGTGCGTCTTAGAGAACGTTTGCACT
TATCCCGTCCGGTTTTTGCCACCTGCTTGAGGACGAATCCCAGAACTTTGGAGAATTGGGAGCAAGGGCGGGCAAAGCCG
AATGCGCAGGCGACGGTGTTGATCCGTTTGGTCGAAAAGTTTCCTGATACGGTTCAGCGACTGGCATCGGTCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References