Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2523289..2523806 Replicon chromosome
Accession NZ_AP018923
Organism Staphylococcus aureus strain JMUB3031

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag D5070_RS13255 Protein ID WP_000113262.1
Coordinates 2523289..2523555 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag D5070_RS13260 Protein ID WP_000584499.1
Coordinates 2523555..2523806 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D5070_RS13230 2518717..2519244 - 528 WP_000973468.1 GNAT family N-acetyltransferase -
D5070_RS13235 2519488..2520312 - 825 WP_000572040.1 formate/nitrite transporter family protein -
D5070_RS13240 2520529..2520711 - 183 WP_000230294.1 hypothetical protein -
D5070_RS13245 2520795..2521262 - 468 WP_000153344.1 SRPBCC domain-containing protein -
D5070_RS13250 2521448..2522995 - 1548 WP_000727756.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
D5070_RS13255 2523289..2523555 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
D5070_RS13260 2523555..2523806 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
D5070_RS13265 2523971..2524072 - 102 Protein_2447 hypothetical protein -
D5070_RS13270 2524079..2524678 - 600 WP_000162810.1 DsbA family protein -
D5070_RS13275 2524697..2525059 - 363 WP_000819843.1 DUF4467 domain-containing protein -
D5070_RS13280 2525314..2526564 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
D5070_RS13285 2526661..2527392 - 732 WP_000615458.1 amino acid ABC transporter ATP-binding protein -
D5070_RS13290 2527389..2528108 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T32453 WP_000113262.1 NZ_AP018923:c2523555-2523289 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T32453 NZ_AP018923:c2523555-2523289 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAAATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT32453 WP_000584499.1 NZ_AP018923:c2523806-2523555 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT32453 NZ_AP018923:c2523806-2523555 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References