Detailed information of TA system TA030828

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 5696473..5697068
• Replicon: chromosome
• Accession: NZ_AP014646
• Organism: Pseudomonas aeruginosa strain NCGM1984

Toxin (Protein)

• Gene name: higB
• Uniprot ID: V6ALY3
• Locus tag: NCGM1984_RS33300
• Protein ID: WP_003113526.1
• Coordinates: 5696790..5697068 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: NCGM1984_RS26685
• Protein ID: WP_003133769.1
• Coordinates: 5696473..5696778 (-)
• Length: 102 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
NCGM1984_RS26670	5693195..5694058	-	864	WP_023098850.1	integrase domain-containing protein	-
NCGM1984_RS26675	5694659..5695801	-	1143	WP_023098851.1	hypothetical protein	-
NCGM1984_RS26685	5696473..5696778	-	306	WP_003133769.1	HigA family addiction module antidote protein	Antitoxin
NCGM1984_RS33300	5696790..5697068	-	279	WP_003113526.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
NCGM1984_RS26690	5697397..5699625	+	2229	WP_023104079.1	TonB-dependent receptor	-
NCGM1984_RS26695	5699696..5700343	-	648	WP_003095021.1	carbonate dehydratase	-
NCGM1984_RS26700	5700405..5701643	-	1239	WP_003095023.1	C69 family dipeptidase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (5-92)

Antitoxin

• Toxin-antitoxin system, antidote protein, HigA (6-82)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10646.19 Da
• Isoelectric Point: 7.8937

>T30828 WP_003113526.1 NZ_AP014646:c5697068-5696790 [Pseudomonas aeruginosa]
MILTFRCDETRQLFETGLSRRWGAILTVATRKLAMLHAATELRDLRSPPGNRLEPLQGKRAGQHSIRINDQWRVCFVWTD
AGPEEVEIVDYH

Nucleotide

• Length: 279 bp

>T30828 NZ_AP014646:c5697068-5696790 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin

Protein

• Length: 102 a.a.
• Molecular weight: 11214.73 Da
• Isoelectric Point: 4.6081

>AT30828 WP_003133769.1 NZ_AP014646:c5696778-5696473 [Pseudomonas aeruginosa]
MATNGMRPIHPGEILRDEFLMELDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLA
TAYAANGEQIEHEIEPLLAHG

Nucleotide

• Length: 306 bp

>AT30828 NZ_AP014646:c5696778-5696473 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAATGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTATTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG

Structures

Toxin

• AlphaFold DB: V6ALY3