Detailed information of TA system TA030316

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-VapI
• Location: 2887289..2887884
• Replicon: chromosome
• Accession: NC_022806
• Organism: Pseudomonas aeruginosa PA1R

Toxin (Protein)

• Gene name: higB
• Uniprot ID: V6ALY3
• Locus tag: PA1R_RS29835
• Protein ID: WP_003113526.1
• Coordinates: 2887606..2887884 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: PA1R_RS13345
• Protein ID: WP_003099268.1
• Coordinates: 2887289..2887594 (-)
• Length: 102 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PA1R_RS13310	2882429..2883277	+	849	WP_003099284.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
PA1R_RS13320	2883444..2884385	+	942	WP_003099281.1	ribose-phosphate pyrophosphokinase	-
PA1R_RS13325	2884502..2885116	+	615	WP_003099279.1	50S ribosomal protein L25/general stress protein Ctc	-
PA1R_RS13330	2885158..2885742	+	585	WP_003099278.1	aminoacyl-tRNA hydrolase	-
PA1R_RS13335	2885783..2886883	+	1101	WP_003099270.1	redox-regulated ATPase YchF	-
PA1R_RS13345	2887289..2887594	-	306	WP_003099268.1	HigA family addiction module antidote protein	Antitoxin
PA1R_RS29835	2887606..2887884	-	279	WP_003113526.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
PA1R_RS13350	2888213..2890441	+	2229	WP_003099265.1	TonB-dependent receptor	-
PA1R_RS13355	2890511..2891158	-	648	WP_003095021.1	carbonate dehydratase	-
PA1R_RS13360	2891220..2892458	-	1239	WP_009316205.1	C69 family dipeptidase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (5-92)

Antitoxin

• Toxin-antitoxin system, antidote protein, HigA (1-97)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10646.19 Da
• Isoelectric Point: 7.8937

>T30316 WP_003113526.1 NC_022806:c2887884-2887606 [Pseudomonas aeruginosa PA1R]
MILTFRCDETRQLFETGLSRRWGAILTVATRKLAMLHAATELRDLRSPPGNRLEPLQGKRAGQHSIRINDQWRVCFVWTD
AGPEEVEIVDYH

Nucleotide

• Length: 279 bp

>T30316 NC_022806:c2887884-2887606 [Pseudomonas aeruginosa PA1R]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACCTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin

Protein

• Length: 102 a.a.
• Molecular weight: 11213.79 Da
• Isoelectric Point: 5.0747

>AT30316 WP_003099268.1 NC_022806:c2887594-2887289 [Pseudomonas aeruginosa PA1R]
MATNGMRPIHPGEILRDEFLMELDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLA
TAYAANGKQIEHEIEPLLAHG

Nucleotide

• Length: 306 bp

>AT30316 NC_022806:c2887594-2887289 [Pseudomonas aeruginosa PA1R]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTATTCGTTAGCA
ACTGCTTATGCGGCGAATGGCAAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG

Structures

Toxin

• AlphaFold DB: V6ALY3