Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 2431054..2431571 | Replicon | chromosome |
Accession | NC_022442 | ||
Organism | Staphylococcus aureus subsp. aureus SA957 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A2S6D1N9 |
Locus tag | SA957_RS12245 | Protein ID | WP_000113263.1 |
Coordinates | 2431054..2431320 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | T1YB60 |
Locus tag | SA957_RS12250 | Protein ID | WP_000584499.1 |
Coordinates | 2431320..2431571 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SA957_RS12220 | 2426314..2426850 | - | 537 | WP_000185901.1 | GNAT family N-acetyltransferase | - |
SA957_RS12225 | 2427263..2428087 | - | 825 | WP_000594633.1 | formate/nitrite transporter family protein | - |
SA957_RS12230 | 2428291..2428473 | - | 183 | WP_000079140.1 | hypothetical protein | - |
SA957_RS12235 | 2428560..2429027 | - | 468 | WP_000153338.1 | SRPBCC domain-containing protein | - |
SA957_RS12240 | 2429213..2430760 | - | 1548 | WP_000727757.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
SA957_RS12245 | 2431054..2431320 | - | 267 | WP_000113263.1 | Txe/YoeB family addiction module toxin | Toxin |
SA957_RS12250 | 2431320..2431571 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
SA957_RS12255 | 2431744..2431835 | - | 92 | Protein_2320 | hypothetical protein | - |
SA957_RS12260 | 2431842..2432441 | - | 600 | WP_000162810.1 | DsbA family protein | - |
SA957_RS12265 | 2432460..2432822 | - | 363 | WP_000819839.1 | DUF4467 domain-containing protein | - |
SA957_RS12270 | 2433077..2434327 | + | 1251 | WP_001012236.1 | FemA/FemB family glycyltransferase FmhA | - |
SA957_RS12275 | 2434424..2435155 | - | 732 | WP_000615464.1 | amino acid ABC transporter ATP-binding protein | - |
SA957_RS12280 | 2435152..2435871 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.01 Da Isoelectric Point: 10.1628
>T30123 WP_000113263.1 NC_022442:c2431320-2431054 [Staphylococcus aureus subsp. aureus SA957]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T30123 NC_022442:c2431320-2431054 [Staphylococcus aureus subsp. aureus SA957]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGAAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGTTATTATAGTAGACGTATCAATCACGAACATAGATTGGTCTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGAAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGTTATTATAGTAGACGTATCAATCACGAACATAGATTGGTCTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT30123 WP_000584499.1 NC_022442:c2431571-2431320 [Staphylococcus aureus subsp. aureus SA957]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT30123 NC_022442:c2431571-2431320 [Staphylococcus aureus subsp. aureus SA957]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACCTCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAATCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGAAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACCTCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAATCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGAAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2S6D1N9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | T1YB60 |