Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 1796254..1796756 | Replicon | chromosome |
Accession | NZ_OW967975 | ||
Organism | Escherichia coli isolate 10 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | U9YDH0 |
Locus tag | LQ150_RS08515 | Protein ID | WP_000767829.1 |
Coordinates | 1796502..1796756 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | S1Q063 |
Locus tag | LQ150_RS08510 | Protein ID | WP_001259255.1 |
Coordinates | 1796254..1796505 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LQ150_RS08485 (1791432) | 1791432..1792499 | - | 1068 | WP_000080141.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
LQ150_RS08490 (1792499) | 1792499..1793569 | - | 1071 | WP_001518029.1 | histidinol-phosphate transaminase | - |
LQ150_RS08495 (1793566) | 1793566..1794870 | - | 1305 | WP_001367667.1 | histidinol dehydrogenase | - |
LQ150_RS08500 (1794876) | 1794876..1795775 | - | 900 | WP_000131792.1 | ATP phosphoribosyltransferase | - |
LQ150_RS08505 (1795921) | 1795921..1795971 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
LQ150_RS08510 (1796254) | 1796254..1796505 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
LQ150_RS08515 (1796502) | 1796502..1796756 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
LQ150_RS08520 (1796839) | 1796839..1797663 | + | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
LQ150_RS08525 (1797709) | 1797709..1798638 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
LQ150_RS08530 (1798853) | 1798853..1798915 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
LQ150_RS08535 (1798905) | 1798905..1800263 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
LQ150_RS08540 (1800442) | 1800442..1801500 | + | 1059 | WP_000492333.1 | thiosulfate utilization transporter TsuA/YeeE | - |
LQ150_RS08545 (1801514) | 1801514..1801741 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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