Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 365925..366591 Replicon chromosome
Accession NZ_OW849527
Organism Citrobacter freundii isolate 22

Toxin (Protein)


Gene name higB Uniprot ID A0A8B5Q945
Locus tag LQ181_RS01710 Protein ID WP_003847996.1
Coordinates 366274..366591 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A4U6IRD5
Locus tag LQ181_RS01705 Protein ID WP_003837894.1
Coordinates 365925..366221 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ181_RS01690 (363101) 363101..363574 - 474 WP_003023524.1 transcription elongation factor GreB -
LQ181_RS01695 (363800) 363800..364519 + 720 WP_001157751.1 two-component system response regulator OmpR -
LQ181_RS01700 (364516) 364516..365868 + 1353 WP_003837891.1 two-component system sensor histidine kinase EnvZ -
LQ181_RS01705 (365925) 365925..366221 - 297 WP_003837894.1 NadS family protein Antitoxin
LQ181_RS01710 (366274) 366274..366591 - 318 WP_003847996.1 hypothetical protein Toxin
LQ181_RS01715 (366714) 366714..368336 - 1623 WP_044701411.1 phosphoenolpyruvate carboxykinase (ATP) -
LQ181_RS01720 (368715) 368715..370433 + 1719 WP_047715944.1 DUF4153 domain-containing protein -
LQ181_RS01725 (370543) 370543..371421 - 879 WP_003023531.1 Hsp33 family molecular chaperone HslO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(39-75)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12225.15 Da        Isoelectric Point: 10.0909

>T295716 WP_003847996.1 NZ_OW849527:c366591-366274 [Citrobacter freundii]
MFTFIELQGFSKRRPLLLPDDEFRAFQEALIENPEAGDTIAGTGGFRKIRWSRSGMGKRSGIRVIYYNVTRKGRIYLALL
YPKNEQDDLTEEQKRVLMHLSNMLI

Download         Length: 318 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11157.93 Da        Isoelectric Point: 7.2050

>AT295716 WP_003837894.1 NZ_OW849527:c366221-365925 [Citrobacter freundii]
MKDELFADLLASAEEMVRIEKGEETPKPEHVHTFSEIDVKAIREATGLRQQDFAIAVGVSYDLVKSWETKRRQPTGAPRK
LLLLIQKNPFIINQLKAI

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A8B5Q945

Antitoxin

Source ID Structure
AlphaFold DB A0A4U6IRD5

References