Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | hok-sok/- |
Location | 101070..101339 | Replicon | plasmid P1 |
Accession | NZ_OW849065 | ||
Organism | Escherichia coli isolate 131 |
Toxin (Protein)
Gene name | hok | Uniprot ID | - |
Locus tag | LQ135_RS26175 | Protein ID | WP_001372321.1 |
Coordinates | 101214..101339 (+) | Length | 42 a.a. |
Antitoxin (RNA)
Gene name | sok | ||
Locus tag | - | ||
Coordinates | 101070..101135 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LQ135_RS26140 | 96905..97390 | + | 486 | WP_042029316.1 | single-stranded DNA-binding protein | - |
LQ135_RS26145 | 97446..97679 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
LQ135_RS26150 | 97738..99696 | + | 1959 | WP_200121858.1 | ParB/RepB/Spo0J family partition protein | - |
LQ135_RS26155 | 99751..100185 | + | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
LQ135_RS26160 | 100182..100944 | + | 763 | Protein_119 | plasmid SOS inhibition protein A | - |
LQ135_RS26165 | 100913..101101 | - | 189 | WP_001299721.1 | hypothetical protein | - |
- | 100913..101137 | + | 225 | NuclAT_0 | - | - |
- | 100913..101137 | + | 225 | NuclAT_0 | - | - |
- | 100913..101137 | + | 225 | NuclAT_0 | - | - |
- | 100913..101137 | + | 225 | NuclAT_0 | - | - |
- | 101070..101135 | - | 66 | - | - | Antitoxin |
LQ135_RS26170 | 101123..101272 | + | 150 | Protein_121 | plasmid maintenance protein Mok | - |
LQ135_RS26175 | 101214..101339 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin |
LQ135_RS26180 | 101559..101789 | + | 231 | WP_071587244.1 | hypothetical protein | - |
LQ135_RS26185 | 101787..101960 | - | 174 | Protein_124 | hypothetical protein | - |
LQ135_RS26190 | 102258..102545 | + | 288 | WP_000107537.1 | hypothetical protein | - |
LQ135_RS26195 | 102666..103487 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
LQ135_RS26200 | 103784..104431 | - | 648 | WP_000614282.1 | transglycosylase SLT domain-containing protein | - |
LQ135_RS26205 | 104717..105100 | + | 384 | WP_001151564.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
LQ135_RS26210 | 105294..105980 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
LQ135_RS26215 | 106074..106301 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | tet(A) / blaOXA-1 / aac(6')-Ib-cr / blaCTX-M-15 / aadA5 / qacE / sul1 | - | 1..146311 | 146311 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 42 a.a. Molecular weight: 4780.69 Da Isoelectric Point: 8.5110
>T295630 WP_001372321.1 NZ_OW849065:101214-101339 [Escherichia coli]
VLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK
VLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK
Download Length: 126 bp
Antitoxin
Download Length: 66 bp
>AT295630 NZ_OW849065:c101135-101070 [Escherichia coli]
GTGGACTAGACATAGGGATGCCTCGTGGTGGTTAATGAAAATTAACTTACTACGGGGCTATCTTCT
GTGGACTAGACATAGGGATGCCTCGTGGTGGTTAATGAAAATTAACTTACTACGGGGCTATCTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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