Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 3049470..3050005 Replicon chromosome
Accession NZ_OW485601
Organism Rhodovastum atsumiense strain G2-11

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag NBY65_RS13795 Protein ID WP_150041991.1
Coordinates 3049470..3049736 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag NBY65_RS13800 Protein ID WP_150041990.1
Coordinates 3049733..3050005 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NBY65_RS13775 (RHOA_2920) 3045587..3046930 - 1344 WP_162530639.1 PQQ-binding-like beta-propeller repeat protein -
NBY65_RS13780 (RHOA_2921) 3046939..3047592 - 654 WP_150041994.1 tetratricopeptide repeat protein -
NBY65_RS13785 (RHOA_2922) 3047698..3048105 + 408 WP_150041993.1 hypothetical protein -
NBY65_RS13790 (RHOA_2923) 3048106..3049440 - 1335 WP_150041992.1 dihydroorotase -
NBY65_RS13795 (RHOA_2924) 3049470..3049736 - 267 WP_150041991.1 Txe/YoeB family addiction module toxin Toxin
NBY65_RS13800 (RHOA_2925) 3049733..3050005 - 273 WP_150041990.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NBY65_RS13805 (RHOA_2926) 3050068..3051834 - 1767 WP_150041989.1 asparagine synthase (glutamine-hydrolyzing) -
NBY65_RS13810 (RHOA_2927) 3051937..3052755 + 819 WP_150041988.1 folate-binding protein YgfZ -
NBY65_RS13815 (RHOA_2928) 3052816..3053694 - 879 WP_150041987.1 DUF2076 domain-containing protein -
NBY65_RS13820 (RHOA_2929) 3054084..3054971 + 888 WP_150041986.1 glycine--tRNA ligase subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-75)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10450.83 Da        Isoelectric Point: 8.5126

>T295421 WP_150041991.1 NZ_OW485601:c3049736-3049470 [Rhodovastum atsumiense]
MKVHFSEEGWEDYQHWCQHDRTVLDKINALIEDTRRRPFTGLGKPEPLKAALSGWWSRRITGEHRLVYRVAGAGAEQRIE
IVQCRYHY

Download         Length: 267 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10085.43 Da        Isoelectric Point: 5.7083

>AT295421 WP_150041990.1 NZ_OW485601:c3050005-3049733 [Rhodovastum atsumiense]
MPHVPYTELRQNLSRYMDEAIESRVPITITRQGGKGNVVLLSEEEFEGWMETVHLLRSPANAQRLLRSIASVEAGGARER
DIIPATGPRD

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References