Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 1683350..1683873 Replicon chromosome
Accession NZ_LT996891
Organism Staphylococcus aureus isolate 24117-WT

Toxin (Protein)


Gene name yoeB Uniprot ID A0A0E1VXK4
Locus tag DYY95_RS08425 Protein ID WP_000074045.1
Coordinates 1683607..1683873 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A0E1VMY7
Locus tag DYY95_RS08420 Protein ID WP_000587619.1
Coordinates 1683350..1683607 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DYY95_RS08395 1678430..1679623 + 1194 WP_000675406.1 MFS transporter -
DYY95_RS08400 1679847..1680596 - 750 WP_000072464.1 hypothetical protein -
DYY95_RS08405 1680791..1682368 + 1578 WP_000143491.1 FMN-binding glutamate synthase family protein -
DYY95_RS08410 1682536..1682991 - 456 WP_000732082.1 DUF1307 domain-containing protein -
DYY95_RS08420 1683350..1683607 + 258 WP_000587619.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DYY95_RS08425 1683607..1683873 + 267 WP_000074045.1 Txe/YoeB family addiction module toxin Toxin
DYY95_RS08430 1684229..1685305 + 1077 WP_001076673.1 M42 family metallopeptidase -
DYY95_RS08435 1685553..1686215 + 663 WP_000923529.1 ATP-binding cassette domain-containing protein -
DYY95_RS08440 1686208..1686984 + 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
DYY95_RS08445 1687380..1688567 + 1188 WP_000026194.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(9-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10632.36 Da        Isoelectric Point: 10.2519

>T294467 WP_000074045.1 NZ_LT996891:1683607-1683873 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHPYLKKTFIEIVETLKNDPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLI
LSAWSHYD

Download         Length: 267 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9735.76 Da        Isoelectric Point: 4.1958

>AT294467 WP_000587619.1 NZ_LT996891:1683350-1683607 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E1VXK4

Antitoxin

Source ID Structure
AlphaFold DB A0A0E1VMY7

References