Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 1812436..1812938 | Replicon | chromosome |
Accession | NZ_LT906474 | ||
Organism | Escherichia coli strain NCTC122 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | U9YDH0 |
Locus tag | CKV98_RS09010 | Protein ID | WP_000767829.1 |
Coordinates | 1812684..1812938 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | S1Q063 |
Locus tag | CKV98_RS09005 | Protein ID | WP_001259255.1 |
Coordinates | 1812436..1812687 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CKV98_RS08975 | 1807614..1808681 | - | 1068 | WP_000080093.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
CKV98_RS08980 | 1808681..1809751 | - | 1071 | WP_000108940.1 | histidinol-phosphate transaminase | - |
CKV98_RS08985 | 1809748..1811052 | - | 1305 | WP_001317939.1 | histidinol dehydrogenase | - |
CKV98_RS08990 | 1811058..1811957 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
CKV98_RS09000 | 1812103..1812153 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
CKV98_RS09005 | 1812436..1812687 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
CKV98_RS09010 | 1812684..1812938 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
CKV98_RS09015 | 1813021..1813845 | + | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
CKV98_RS09020 | 1813891..1814820 | + | 930 | WP_081508817.1 | LysR family transcriptional regulator | - |
CKV98_RS23540 | 1815035..1815097 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
CKV98_RS09025 | 1815087..1816445 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
CKV98_RS09030 | 1816624..1817682 | + | 1059 | WP_000492305.1 | transport protein YeeE | - |
CKV98_RS09035 | 1817696..1817923 | + | 228 | WP_000985273.1 | sulfurtransferase TusA family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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