Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-DinJ
Location 113920..114454 Replicon chromosome
Accession NZ_LT706985
Organism Propionimicrobium sp. Marseille-P3275 strain Marseille-P3275T

Toxin (Protein)


Gene name yafQ Uniprot ID -
Locus tag CZ356_RS00580 Protein ID WP_076387812.1
Coordinates 114170..114454 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID -
Locus tag CZ356_RS00575 Protein ID WP_076389689.1
Coordinates 113920..114183 (+) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CZ356_RS00545 109552..109815 + 264 WP_076387806.1 immunity 17 family protein -
CZ356_RS00550 109802..110470 + 669 WP_197684197.1 DUF4304 domain-containing protein -
CZ356_RS00555 110610..111848 + 1239 WP_076387808.1 DUF695 domain-containing protein -
CZ356_RS00560 111874..112311 + 438 WP_197684198.1 hypothetical protein -
CZ356_RS00565 112586..112864 - 279 WP_057002045.1 hypothetical protein -
CZ356_RS00570 113073..113519 - 447 WP_162272852.1 hypothetical protein -
CZ356_RS00575 113920..114183 + 264 WP_076389689.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CZ356_RS00580 114170..114454 + 285 WP_076387812.1 type II toxin-antitoxin system YafQ family toxin Toxin
CZ356_RS00585 114660..115040 + 381 WP_076387814.1 hypothetical protein -
CZ356_RS00590 115131..116336 + 1206 WP_076389690.1 SPFH domain-containing protein -
CZ356_RS00595 116558..117763 + 1206 WP_076387816.1 ATP-binding protein -
CZ356_RS00600 117780..118754 + 975 WP_076387818.1 TPM domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(8-94)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-83)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11058.60 Da        Isoelectric Point: 8.8752

>T293447 WP_076387812.1 NZ_LT706985:114170-114454 [Propionimicrobium sp. Marseille-P3275]
MRLTSVFRTYQFKRDAKAPFKKNYDAQKLASAVEALLAQDRDGLCTHYRDHALQGSWKGYREIHIEADWLLIYRVERSEL
LLVLTRTGSHDDLF

Download         Length: 285 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9423.50 Da        Isoelectric Point: 4.3138

>AT293447 WP_076389689.1 NZ_LT706985:113920-114183 [Propionimicrobium sp. Marseille-P3275]
MILVANVSFRTDDETKAQAAELFRDLGLDMSTAINMFLRQSIASNGIPFTPHRENFASAVARAQADSRTGASFNSVAELM
ADLNEAD

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References