Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | ldrD-rdlD/Ldr(toxin) |
Location | 1297658..1297880 | Replicon | chromosome |
Accession | NZ_LT615377 | ||
Organism | Escherichia coli isolate 106 |
Toxin (Protein)
Gene name | ldrD | Uniprot ID | D3H2K1 |
Locus tag | BV315_RS07025 | Protein ID | WP_000170955.1 |
Coordinates | 1297658..1297765 (-) | Length | 36 a.a. |
Antitoxin (RNA)
Gene name | rdlD | ||
Locus tag | - | ||
Coordinates | 1297813..1297880 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BV315_RS06985 | 1293514..1294347 | + | 834 | WP_000456467.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
BV315_RS06990 | 1294344..1294736 | + | 393 | WP_000200374.1 | invasion regulator SirB2 | - |
BV315_RS06995 | 1294740..1295549 | + | 810 | WP_001257044.1 | invasion regulator SirB1 | - |
BV315_RS07000 | 1295585..1296439 | + | 855 | WP_000811065.1 | 3-deoxy-8-phosphooctulonate synthase | - |
BV315_RS07005 | 1296588..1296695 | - | 108 | WP_000170955.1 | small toxic polypeptide LdrA/LdrC | - |
- | 1296743..1296809 | + | 67 | NuclAT_33 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_33 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_33 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_33 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_35 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_35 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_35 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_35 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_37 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_37 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_37 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_37 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_39 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_39 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_39 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_39 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_41 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_41 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_41 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_41 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_43 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_43 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_43 | - | - |
- | 1296743..1296809 | + | 67 | NuclAT_43 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_17 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_17 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_17 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_17 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_20 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_20 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_20 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_20 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_23 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_23 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_23 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_23 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_26 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_26 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_26 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_26 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_29 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_29 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_29 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_29 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_32 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_32 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_32 | - | - |
- | 1296745..1296810 | + | 66 | NuclAT_32 | - | - |
BV315_RS07015 | 1297123..1297230 | - | 108 | WP_000170963.1 | small toxic polypeptide LdrB | - |
- | 1297278..1297345 | + | 68 | NuclAT_16 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_16 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_16 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_16 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_19 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_19 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_19 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_19 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_22 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_22 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_22 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_22 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_25 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_25 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_25 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_25 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_28 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_28 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_28 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_28 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_31 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_31 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_31 | - | - |
- | 1297278..1297345 | + | 68 | NuclAT_31 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_34 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_34 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_34 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_34 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_36 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_36 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_36 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_36 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_38 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_38 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_38 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_38 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_40 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_40 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_40 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_40 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_42 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_42 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_42 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_42 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_44 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_44 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_44 | - | - |
- | 1297279..1297344 | + | 66 | NuclAT_44 | - | - |
BV315_RS07025 | 1297658..1297765 | - | 108 | WP_000170955.1 | small toxic polypeptide LdrA/LdrC | Toxin |
- | 1297813..1297880 | + | 68 | NuclAT_15 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_15 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_15 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_15 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_18 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_18 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_18 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_18 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_21 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_21 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_21 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_21 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_24 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_24 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_24 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_24 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_27 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_27 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_27 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_27 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_30 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_30 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_30 | - | Antitoxin |
- | 1297813..1297880 | + | 68 | NuclAT_30 | - | Antitoxin |
BV315_RS07035 | 1298169..1299269 | - | 1101 | WP_000063607.1 | sodium-potassium/proton antiporter ChaA | - |
BV315_RS07040 | 1299539..1299769 | + | 231 | WP_001146444.1 | putative cation transport regulator ChaB | - |
BV315_RS07045 | 1299927..1300622 | + | 696 | WP_001336325.1 | glutathione-specific gamma-glutamylcyclotransferase | - |
BV315_RS07050 | 1300666..1301019 | - | 354 | WP_001169669.1 | DsrE/F sulfur relay family protein YchN | - |
BV315_RS07055 | 1301204..1302598 | + | 1395 | WP_000086217.1 | inverse autotransporter invasin YchO | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 36 a.a. Molecular weight: 4013.82 Da Isoelectric Point: 11.4779
>T293340 WP_000170955.1 NZ_LT615377:c1297765-1297658 [Escherichia coli]
MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK
MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK
Download Length: 108 bp
Antitoxin
Download Length: 68 bp
>AT293340 NZ_LT615377:1297813-1297880 [Escherichia coli]
GTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCTCT
GTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|