Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 665870..666686 Replicon chromosome
Accession NZ_LT556085
Organism Citrobacter amalonaticus strain 92

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag CITRO92_RS03275 Protein ID WP_109739561.1
Coordinates 665870..666346 (-) Length 159 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID A0A3Q8DNJ3
Locus tag CITRO92_RS03280 Protein ID WP_042999108.1
Coordinates 666351..666686 (-) Length 112 a.a.

Genomic Context

CITRO92_RS03255CITRO92_RS03260CITRO92_RS03265CITRO92_RS03270CITRO92_RS03275CITRO92_RS03280CITRO92_RS03285CITRO92_RS03290CITRO92_RS03295CITRO92_RS03300
Location: 660975..661718 (744 bp)
Type: Others
Protein ID: WP_044264050.1
Location: 661761..664235 (2475 bp)
Type: Others
Protein ID: WP_044257386.1
Location: 664299..664748 (450 bp)
Type: Others
Protein ID: WP_086513030.1
Location: 664916..665446 (531 bp)
Type: Others
Protein ID: WP_042999110.1
Location: 665870..666346 (477 bp)
Type: Toxin
Protein ID: WP_109739561.1
Location: 666351..666686 (336 bp)
Type: Antitoxin
Protein ID: WP_042999108.1
Location: 666901..667437 (537 bp)
Type: Others
Protein ID: WP_042999107.1
Location: 667434..668030 (597 bp)
Type: Others
Protein ID: WP_042999106.1
Location: 668075..668848 (774 bp)
Type: Others
Protein ID: WP_044327723.1
Location: 668841..669467 (627 bp)
Type: Others
Protein ID: WP_109739562.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CITRO92_RS03255660975..661718-744WP_044264050.1molecular chaperone-
CITRO92_RS03260661761..664235-2475WP_044257386.1fimbria/pilus outer membrane usher protein-
CITRO92_RS03265664299..664748-450WP_086513030.1type 1 fimbrial protein-
CITRO92_RS03270664916..665446-531WP_042999110.1type 1 fimbrial protein-
CITRO92_RS03275665870..666346-477WP_109739561.1type II toxin-antitoxin system YhaV family toxinToxin
CITRO92_RS03280666351..666686-336WP_042999108.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
CITRO92_RS03285666901..667437-537WP_042999107.1ferredoxin-type protein NapF-
CITRO92_RS03290667434..668030-597WP_042999106.1molecular chaperone-
CITRO92_RS03295668075..668848-774WP_044327723.1dimethyl sulfoxide reductase anchor subunit-
CITRO92_RS03300668841..669467-627WP_109739562.1dimethylsulfoxide reductase subunit B-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(15-110)


Sequences

Toxin        


Download         Length: 159 a.a.        Molecular weight: 18170.78 Da        Isoelectric Point: 8.2616

>T293148 WP_109739561.1 NZ_LT556085:c666346-665870 [Citrobacter amalonaticus]
MDFPTWLNGWTIYAHPCFIDQYNALVARVEDLKHRFPDPIVFQKKKETMVLAHLLKSIANITHEPRASVYRPGDSIGKAY
TDWSRAKFGGGRYRLFFRYSLESKIIVIAWVNDEGSLRTCGSKTDAYKIFGKMLDEGNPPDDWLSLLQACQNDGKEHL

Download         Length: 477 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12505.83 Da        Isoelectric Point: 4.1876

>AT293148 WP_042999108.1 NZ_LT556085:c666686-666351 [Citrobacter amalonaticus]
MFAYVRSEDIAIEADSKLTERHQTTIPASIRDALHLRSGDRIHYTLLSTGEVLLSKYSEATEDGVMRSFLDFLSQDVANN
PQTLKKLDLSRGYELVDGIDVNLDDEISDED

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A3Q8DNJ3

References