Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 366991..367657 Replicon chromosome
Accession NZ_LS992175
Organism Citrobacter freundii isolate Citrobacter freundii str. E2614

Toxin (Protein)


Gene name higB Uniprot ID A0A8B5Q945
Locus tag CFE2614_RS01745 Protein ID WP_003847996.1
Coordinates 367340..367657 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A4U6IRD5
Locus tag CFE2614_RS01740 Protein ID WP_003837894.1
Coordinates 366991..367287 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CFE2614_RS01725 364167..364640 - 474 WP_003023524.1 transcription elongation factor GreB -
CFE2614_RS01730 364866..365585 + 720 WP_001157751.1 two-component system response regulator OmpR -
CFE2614_RS01735 365582..366934 + 1353 WP_134213237.1 two-component system sensor histidine kinase EnvZ -
CFE2614_RS01740 366991..367287 - 297 WP_003837894.1 helix-turn-helix domain-containing protein Antitoxin
CFE2614_RS01745 367340..367657 - 318 WP_003847996.1 hypothetical protein Toxin
CFE2614_RS01750 367780..369402 - 1623 WP_044701411.1 phosphoenolpyruvate carboxykinase (ATP) -
CFE2614_RS01755 369781..371499 + 1719 WP_047715944.1 DUF4153 domain-containing protein -
CFE2614_RS01760 371609..372487 - 879 WP_003023531.1 Hsp33 family molecular chaperone HslO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(39-75)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12225.15 Da        Isoelectric Point: 10.0909

>T292795 WP_003847996.1 NZ_LS992175:c367657-367340 [Citrobacter freundii]
MFTFIELQGFSKRRPLLLPDDEFRAFQEALIENPEAGDTIAGTGGFRKIRWSRSGMGKRSGIRVIYYNVTRKGRIYLALL
YPKNEQDDLTEEQKRVLMHLSNMLI

Download         Length: 318 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11157.93 Da        Isoelectric Point: 7.2050

>AT292795 WP_003837894.1 NZ_LS992175:c367287-366991 [Citrobacter freundii]
MKDELFADLLASAEEMVRIEKGEETPKPEHVHTFSEIDVKAIREATGLRQQDFAIAVGVSYDLVKSWETKRRQPTGAPRK
LLLLIQKNPFIINQLKAI

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A8B5Q945

Antitoxin

Source ID Structure
AlphaFold DB A0A4U6IRD5

References