Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) HipBST/HipA-HipA
Location 349919..351267 Replicon chromosome
Accession NZ_LS483480
Organism Haemophilus influenzae strain NCTC13377

Toxin (Protein)


Gene name HipT Uniprot ID A0A2X4XRN4
Locus tag DQL19_RS01775 Protein ID WP_005690165.1
Coordinates 350236..351267 (+) Length 344 a.a.

Antitoxin (Protein)


Gene name HipS Uniprot ID F9GV76
Locus tag DQL19_RS01770 Protein ID WP_005635266.1
Coordinates 349919..350239 (+) Length 107 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQL19_RS01730 345340..345618 + 279 WP_005661211.1 cell division protein FtsB -
DQL19_RS01735 345618..346295 + 678 WP_077643961.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
DQL19_RS01740 346292..346768 + 477 WP_005661209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
DQL19_RS01745 347073..347507 - 435 WP_005690172.1 D-tyrosyl-tRNA(Tyr) deacylase -
DQL19_RS01750 347504..347944 - 441 WP_005667635.1 FMN-binding protein MioC -
DQL19_RS01755 348042..348260 - 219 WP_005650820.1 cell division protein ZapB -
DQL19_RS01760 348422..349423 + 1002 WP_005690169.1 class II fructose-bisphosphatase -
DQL19_RS01765 349623..349931 + 309 WP_005690167.1 helix-turn-helix domain-containing protein -
DQL19_RS01770 349919..350239 + 321 WP_005635266.1 type II toxin-antitoxin system HipA family toxin Antitoxin
DQL19_RS01775 350236..351267 + 1032 WP_005690165.1 type II toxin-antitoxin system HipA family toxin Toxin
DQL19_RS01780 351351..353009 - 1659 WP_077643960.1 thiol reductant ABC exporter subunit CydC -
DQL19_RS01785 353002..354747 - 1746 WP_077643959.1 ABC transporter ATP-binding protein/permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA-like, C-terminal

(56-290)

Antitoxin

HipA, N-terminal subdomain 1

(9-101)


Sequences

Toxin        


Download         Length: 344 a.a.        Molecular weight: 39855.45 Da        Isoelectric Point: 6.5777

>T292616 WP_005690165.1 NZ_LS483480:350236-351267 [Haemophilus influenzae]
MNFCRILLKPLKKNEALSGYSAEGLHYLTGNKHFNPELPFSRQEFITVKPQKQQGMSISGFQPKLQLIIEDDHFNSINQQ
GNYILKPSPEEYPFLAENEHATMRIMKELGFDVPENGLVSFAGEQNHKEFAFVIKRFDRDKQQKTMHQEQLDGAMNIRDK
YGKIGADNEQYVSYEQIAKFILQHTENHLAQQREIFRRIIYAYLLGNNDLHLRNFSFIYPKNSHPKLAPIYDFVSVSPYP
EIFNSTLLALPLLVREEGNATLAKGFNTQYGEYIGDDFVEFGENIGLNKNVIIQKLIPEITQEKEKVEQIYSQSFMPQPH
IDCVLKTYRKRLAFLNLLNEPEL

Download         Length: 1032 bp

Antitoxin


Download         Length: 107 a.a.        Molecular weight: 12441.11 Da        Isoelectric Point: 5.9670

>AT292616 WP_005635266.1 NZ_LS483480:349919-350239 [Haemophilus influenzae]
MRDLVRSGKVFLYGEFIGLLREDHRGFHFAYNPDYQGIPLSLSFPIEQSPFHSDTLFPYFASLVPEGWLKHKYAFHQRID
EGDMFRFLLNNGENMLGAVQIQEEKQ

Download         Length: 321 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2X4XRN4

Antitoxin

Source ID Structure
AlphaFold DB F9GV76

References