Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2523466..2523989 Replicon chromosome
Accession NZ_LS483350
Organism Staphylococcus aureus strain NCTC11940

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag DQM92_RS13210 Protein ID WP_000074048.1
Coordinates 2523466..2523732 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag DQM92_RS13215 Protein ID WP_000587616.1
Coordinates 2523732..2523989 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQM92_RS13190 2518773..2519960 - 1188 WP_000026194.1 MFS transporter -
DQM92_RS13195 2520356..2521132 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
DQM92_RS13200 2521125..2521787 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
DQM92_RS13205 2522035..2523111 - 1077 WP_001076671.1 M42 family metallopeptidase -
DQM92_RS13210 2523466..2523732 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
DQM92_RS13215 2523732..2523989 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DQM92_RS13225 2524348..2524803 + 456 WP_000732082.1 DUF1307 domain-containing protein -
DQM92_RS13230 2524971..2526548 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
DQM92_RS13235 2526743..2527492 + 750 WP_000072442.1 hypothetical protein -
DQM92_RS13240 2527716..2528909 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T292410 WP_000074048.1 NZ_LS483350:c2523732-2523466 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT292410 WP_000587616.1 NZ_LS483350:c2523989-2523732 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References