Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2466615..2467132 Replicon chromosome
Accession NZ_LS483350
Organism Staphylococcus aureus strain NCTC11940

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag DQM92_RS12890 Protein ID WP_000113262.1
Coordinates 2466615..2466881 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag DQM92_RS12895 Protein ID WP_000584499.1
Coordinates 2466881..2467132 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQM92_RS12860 2462041..2462577 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
DQM92_RS12865 2462810..2463634 - 825 WP_000572040.1 formate/nitrite transporter family protein -
DQM92_RS12870 2463851..2464033 - 183 WP_000230294.1 hypothetical protein -
DQM92_RS12875 2464117..2464584 - 468 WP_000153344.1 SRPBCC domain-containing protein -
DQM92_RS12880 2464770..2466320 - 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
DQM92_RS12885 2466509..2466580 - 72 Protein_2375 hypothetical protein -
DQM92_RS12890 2466615..2466881 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
DQM92_RS12895 2466881..2467132 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DQM92_RS12900 2467297..2467398 - 102 WP_001791744.1 hypothetical protein -
DQM92_RS12905 2467405..2468004 - 600 WP_000162813.1 DsbA family protein -
DQM92_RS12910 2468023..2468385 - 363 WP_000819843.1 DUF4467 domain-containing protein -
DQM92_RS12915 2468640..2469890 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
DQM92_RS12920 2469987..2470718 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
DQM92_RS12925 2470715..2471434 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T292408 WP_000113262.1 NZ_LS483350:c2466881-2466615 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT292408 WP_000584499.1 NZ_LS483350:c2467132-2466881 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References