Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2436897..2437396 Replicon chromosome
Accession NZ_LS483310
Organism Staphylococcus aureus strain NCTC9752

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag DQL84_RS12750 Protein ID WP_000074044.1
Coordinates 2436897..2437139 (-) Length 81 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YBB2
Locus tag DQL84_RS12755 Protein ID WP_000587618.1
Coordinates 2437139..2437396 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQL84_RS12730 2432203..2433390 - 1188 WP_000026189.1 MFS transporter -
DQL84_RS12735 2433786..2434562 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
DQL84_RS12740 2434555..2435217 - 663 WP_000923523.1 ATP-binding cassette domain-containing protein -
DQL84_RS12745 2435465..2436541 - 1077 WP_001836950.1 M42 family metallopeptidase -
DQL84_RS12750 2436897..2437139 - 243 WP_000074044.1 Txe/YoeB family addiction module toxin Toxin
DQL84_RS12755 2437139..2437396 - 258 WP_000587618.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DQL84_RS12765 2437755..2438210 + 456 WP_000732082.1 DUF1307 domain-containing protein -
DQL84_RS12770 2438378..2439955 - 1578 WP_000143494.1 FMN-binding glutamate synthase family protein -
DQL84_RS12775 2440150..2440899 + 750 WP_000072459.1 hypothetical protein -
DQL84_RS12780 2441130..2442323 - 1194 WP_000675411.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(6-79)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 81 a.a.        Molecular weight: 9649.18 Da        Isoelectric Point: 10.1469

>T292284 WP_000074044.1 NZ_LS483310:c2437139-2436897 [Staphylococcus aureus]
MSNYTVKIKNSAKLDLKKTFIEIVETLKNNPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLILSAWSHYD

Download         Length: 243 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9762.78 Da        Isoelectric Point: 4.1958

>AT292284 WP_000587618.1 NZ_LS483310:c2437396-2437139 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB T1YBB2

References