Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 632333..633060 Replicon chromosome
Accession NZ_LS483303
Organism Escherichia coli strain NCTC9967

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag DQM88_RS03290 Protein ID WP_000550189.1
Coordinates 632333..632647 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag DQM88_RS03295 Protein ID WP_001514564.1
Coordinates 632644..633060 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQM88_RS03265 628490..629476 - 987 WP_000617698.1 Gfo/Idh/MocA family oxidoreductase -
DQM88_RS03270 629555..630247 - 693 WP_000942548.1 vancomycin high temperature exclusion protein -
DQM88_RS03275 630324..630827 - 504 WP_089570130.1 M48 family metallopeptidase -
DQM88_RS03280 630912..632048 + 1137 WP_001514565.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
DQM88_RS03290 632333..632647 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
DQM88_RS03295 632644..633060 + 417 WP_001514564.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
DQM88_RS03300 633105..635123 - 2019 WP_001544111.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
DQM88_RS03305 635549..637900 - 2352 WP_001514561.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-136)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T292223 WP_000550189.1 NZ_LS483303:632333-632647 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15025.44 Da        Isoelectric Point: 4.4547

>AT292223 WP_001514564.1 NZ_LS483303:632644-633060 [Escherichia coli]
MITIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References