Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 386837..387483 | Replicon | chromosome |
Accession | NZ_LR890457 | ||
Organism | Klebsiella pneumoniae isolate KSB1_6G-sc-2280276 |
Toxin (Protein)
Gene name | higB | Uniprot ID | A0A486LFK7 |
Locus tag | JMX47_RS01860 | Protein ID | WP_023301313.1 |
Coordinates | 386837..387184 (+) | Length | 116 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | W8UB68 |
Locus tag | JMX47_RS01865 | Protein ID | WP_002920557.1 |
Coordinates | 387184..387483 (+) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JMX47_RS01850 | 382763..384196 | + | 1434 | WP_002920564.1 | glycogen synthase GlgA | - |
JMX47_RS01855 | 384214..386661 | + | 2448 | WP_002920561.1 | glycogen phosphorylase | - |
JMX47_RS01860 | 386837..387184 | + | 348 | WP_023301313.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
JMX47_RS01865 | 387184..387483 | + | 300 | WP_002920557.1 | helix-turn-helix transcriptional regulator | Antitoxin |
JMX47_RS01870 | 387546..389054 | - | 1509 | WP_002920554.1 | glycerol-3-phosphate dehydrogenase | - |
JMX47_RS01875 | 389259..389588 | + | 330 | WP_002920552.1 | thiosulfate sulfurtransferase GlpE | - |
JMX47_RS01880 | 389639..390469 | + | 831 | WP_004151408.1 | rhomboid family intramembrane serine protease GlpG | - |
JMX47_RS01885 | 390519..391277 | + | 759 | WP_002920548.1 | DeoR/GlpR family transcriptional regulator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 13506.49 Da Isoelectric Point: 6.2327
>T291052 WP_023301313.1 NZ_LR890457:386837-387184 [Klebsiella pneumoniae]
MWDVETTDTFDAWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGMNEKRFYKETITMADREFSQHLTKER
MWDVETTDTFDAWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGMNEKRFYKETITMADREFSQHLTKER
Download Length: 348 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A486LFK7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0E1CBF8 |