Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HTH_XRE
Location 4623257..4623936 Replicon chromosome
Accession NZ_LR890334
Organism Escherichia coli isolate MINF_9A-sc-2280436

Toxin (Protein)


Gene name higB Uniprot ID A0A0A1A1R1
Locus tag JMW07_RS22175 Protein ID WP_000057541.1
Coordinates 4623257..4623559 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID S1QAY3
Locus tag JMW07_RS22180 Protein ID WP_000806442.1
Coordinates 4623595..4623936 (+) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW07_RS22155 4618520..4619740 - 1221 WP_022645286.1 fosmidomycin MFS transporter -
JMW07_RS22160 4619958..4621610 + 1653 WP_000771748.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
JMW07_RS22165 4621647..4622126 - 480 WP_000186638.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -
JMW07_RS22170 4622330..4623124 - 795 WP_022645287.1 TraB/GumN family protein -
JMW07_RS22175 4623257..4623559 + 303 WP_000057541.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
JMW07_RS22180 4623595..4623936 + 342 WP_000806442.1 HigA family addiction module antidote protein Antitoxin
JMW07_RS22185 4623994..4626498 - 2505 WP_038431953.1 copper-exporting P-type ATPase CopA -
JMW07_RS22190 4626761..4627693 + 933 WP_022645289.1 glutaminase A -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4623257..4632537 9280


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(9-98)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-100)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11795.37 Da        Isoelectric Point: 10.2638

>T290702 WP_000057541.1 NZ_LR890334:4623257-4623559 [Escherichia coli]
MAQKNNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY

Download         Length: 303 bp

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 13171.10 Da        Isoelectric Point: 5.7790

>AT290702 WP_000806442.1 NZ_LR890334:4623595-4623936 [Escherichia coli]
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Download         Length: 342 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0A1A1R1

Antitoxin

Source ID Structure
PDB 2EBY
AlphaFold DB S1QAY3

References