Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/Doc-RelB |
Location | 324659..325245 | Replicon | chromosome |
Accession | NZ_LR890235 | ||
Organism | Klebsiella pneumoniae isolate INF334-sc-2280143 |
Toxin (Protein)
Gene name | doc | Uniprot ID | A0A485R3H6 |
Locus tag | JMV98_RS01505 | Protein ID | WP_032417643.1 |
Coordinates | 324877..325245 (+) | Length | 123 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | W9B1V1 |
Locus tag | JMV98_RS01500 | Protein ID | WP_004174006.1 |
Coordinates | 324659..324880 (+) | Length | 74 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JMV98_RS01480 | 320816..321742 | + | 927 | WP_002920807.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
JMV98_RS01485 | 321739..323016 | + | 1278 | WP_004174005.1 | branched chain amino acid ABC transporter permease LivM | - |
JMV98_RS01490 | 323013..323780 | + | 768 | WP_002920803.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | - |
JMV98_RS01495 | 323782..324495 | + | 714 | WP_004145133.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
JMV98_RS01500 | 324659..324880 | + | 222 | WP_004174006.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
JMV98_RS01505 | 324877..325245 | + | 369 | WP_032417643.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin |
JMV98_RS01510 | 325518..326834 | + | 1317 | WP_032417642.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
JMV98_RS01515 | 326941..327828 | + | 888 | WP_002920792.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
JMV98_RS01520 | 327825..328670 | + | 846 | WP_032416348.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
JMV98_RS01525 | 328672..329742 | + | 1071 | WP_004150074.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 321739..330479 | 8740 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 123 a.a. Molecular weight: 13584.98 Da Isoelectric Point: 8.6410
>T290356 WP_032417643.1 NZ_LR890235:324877-325245 [Klebsiella pneumoniae]
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRMLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRMLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG
Download Length: 369 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A485R3H6 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A5E5YJY7 |