Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 4511288..4511711 Replicon chromosome
Accession NZ_LR882963
Organism Planktothrix agardhii strain No.66

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag NMG84_RS20625 Protein ID WP_081693770.1
Coordinates 4511288..4511437 (-) Length 50 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag NMG84_RS20630 Protein ID WP_227350538.1
Coordinates 4511430..4511711 (-) Length 94 a.a.

Genomic Context

NMG84_RS20595NMG84_RS20600NMG84_RS20610NMG84_RS20605NMG84_RS20615NMG84_RS20620NMG84_RS20625NMG84_RS20630NMG84_RS20635NMG84_RS20640NMG84_RS20645NMG84_RS20650NMG84_RS20655
Location: 4506352..4506927 (576 bp)
Type: Others
Protein ID: WP_227397778.1
Location: 4506931..4508640 (1710 bp)
Type: Others
Protein ID: WP_227397777.1
Location: 4510280..4510411 (132 bp)
Type: Others
Protein ID: WP_026796378.1
Location: 4508786..4510003 (1218 bp)
Type: Others
Protein ID: WP_227350540.1
Location: 4510454..4510864 (411 bp)
Type: Others
Protein ID: WP_235753243.1
Location: 4511073..4511252 (180 bp)
Type: Others
Protein ID: WP_227365709.1
Location: 4511288..4511437 (150 bp)
Type: Toxin
Protein ID: WP_081693770.1
Location: 4511430..4511711 (282 bp)
Type: Antitoxin
Protein ID: WP_227350538.1
Location: 4511848..4512321 (474 bp)
Type: Others
Protein ID: WP_227357893.1
Location: 4512409..4514130 (1722 bp)
Type: Others
Protein ID: WP_235760406.1
Location: 4514141..4514680 (540 bp)
Type: Others
Protein ID: WP_254032663.1
Location: 4514784..4515473 (690 bp)
Type: Others
Protein ID: WP_227350534.1
Location: 4515737..4516312 (576 bp)
Type: Others
Protein ID: WP_254032664.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NMG84_RS20595 (PANO66_04114)4506352..4506927+576WP_227397778.1hypothetical protein-
NMG84_RS20600 (PANO66_04115)4506931..4508640+1710WP_227397777.1hypothetical protein-
NMG84_RS20605 (PANO66_04116)4508786..4510003-1218WP_227350540.1glycosyltransferase family 4 protein-
NMG84_RS20610 (PANO66_04117)4510280..4510411+132WP_026796378.1photosystem II reaction center protein Ycf12-
NMG84_RS20615 (PANO66_04118)4510454..4510864-411WP_235753243.1DUF4346 domain-containing protein-
NMG84_RS20620 (PANO66_04119)4511073..4511252-180WP_227365709.1hypothetical protein-
NMG84_RS206254511288..4511437-150WP_081693770.1type II toxin-antitoxin system YoeB family toxinToxin
NMG84_RS20630 (PANO66_04120)4511430..4511711-282WP_227350538.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
NMG84_RS20635 (PANO66_04121)4511848..4512321-474WP_227357893.1hypothetical protein-
NMG84_RS20640 (PANO66_04122)4512409..4514130-1722WP_235760406.1solute carrier family 26 protein-
NMG84_RS20645 (PANO66_04123)4514141..4514680-540WP_254032663.1rhodanese-like domain-containing protein-
NMG84_RS20650 (PANO66_04124)4514784..4515473-690WP_227350534.1MBL fold metallo-hydrolase-
NMG84_RS20655 (PANO66_04125)4515737..4516312-576WP_254032664.1Uma2 family endonuclease-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(8-37)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-83)


Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 6014.06 Da        Isoelectric Point: 10.2321

>T289986 WP_081693770.1 NZ_LR882963:c4511437-4511288 [Planktothrix agardhii]
MSNRILAWTDEAWDNYIYWQNQDRKTLKKINKIIKICPPYPSISRKFIL

Download         Length: 150 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10448.00 Da        Isoelectric Point: 6.0673

>AT289986 WP_227350538.1 NZ_LR882963:c4511711-4511430 [Planktothrix agardhii]
VLIVVQVTAMKVVTFSEAKSQLKTVLDRVVEDADYTIITRRDADHAVVMSLDYFNGLLETVHLLKSPANAAHLERSIAQY
RQGKALEHQLIDE

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References