Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 3602418..3602814 Replicon chromosome
Accession NZ_LR882952
Organism Planktothrix agardhii strain No.976

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag NMG88_RS16695 Protein ID WP_081693770.1
Coordinates 3602418..3602567 (-) Length 50 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A1J1JAK8
Locus tag NMG88_RS16700 Protein ID WP_026785375.1
Coordinates 3602560..3602814 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NMG88_RS16675 (NO976_03339) 3599916..3601133 - 1218 WP_227350540.1 glycosyltransferase family 4 protein -
NMG88_RS16680 (NO976_03340) 3601410..3601541 + 132 WP_026796378.1 photosystem II reaction center protein Ycf12 -
NMG88_RS16685 (NO976_03341) 3601584..3601994 - 411 WP_227351489.1 DUF4346 domain-containing protein -
NMG88_RS16690 (NO976_03342) 3602203..3602382 - 180 WP_227365709.1 hypothetical protein -
NMG88_RS16695 3602418..3602567 - 150 WP_081693770.1 type II toxin-antitoxin system YoeB family toxin Toxin
NMG88_RS16700 (NO976_03343) 3602560..3602814 - 255 WP_026785375.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NMG88_RS16705 (NO976_03344) 3602990..3603463 - 474 WP_042157411.1 hypothetical protein -
NMG88_RS16710 (NO976_03345) 3603551..3605272 - 1722 WP_254034873.1 solute carrier family 26 protein -
NMG88_RS16715 (NO976_03346) 3605283..3605822 - 540 WP_042153957.1 rhodanese-like domain-containing protein -
NMG88_RS16720 (NO976_03347) 3605926..3606615 - 690 WP_227350534.1 MBL fold metallo-hydrolase -
NMG88_RS16725 (NO976_03348) 3606879..3607454 - 576 WP_227397774.1 Uma2 family endonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(8-37)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 6014.06 Da        Isoelectric Point: 10.2321

>T289982 WP_081693770.1 NZ_LR882952:c3602567-3602418 [Planktothrix agardhii]
MSNRILAWTDEAWDNYIYWQNQDRKTLKKINKIIKICPPYPSISRKFIL

Download         Length: 150 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9524.84 Da        Isoelectric Point: 6.0673

>AT289982 WP_026785375.1 NZ_LR882952:c3602814-3602560 [Planktothrix agardhii]
MKVVTFSEAKSQLKTVLDRVVEDADYTIITRRDADHAVVMSLDYFNGLLETVHLLKSPANAAHLERSIAQYRQGKALEHQ
LIDE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A1J1JAK8

References