Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 3941329..3941725 Replicon chromosome
Accession NZ_LR882934
Organism Planktothrix agardhii strain NIVA-CYA126/8

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag NMK38_RS17815 Protein ID WP_081693770.1
Coordinates 3941329..3941478 (-) Length 50 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A1J1JAK8
Locus tag NMK38_RS17820 Protein ID WP_026785375.1
Coordinates 3941471..3941725 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NMK38_RS17795 (NIVACYA_03560) 3938732..3939949 - 1218 WP_026796379.1 glycosyltransferase family 4 protein -
NMK38_RS17800 (NIVACYA_03561) 3940226..3940357 + 132 WP_026796378.1 photosystem II reaction center protein Ycf12 -
NMK38_RS17805 (NIVACYA_03562) 3940400..3940801 - 402 WP_026785373.1 DUF4346 domain-containing protein -
NMK38_RS17810 (NIVACYA_03563) 3941021..3941293 - 273 WP_026785374.1 hypothetical protein -
NMK38_RS17815 3941329..3941478 - 150 WP_081693770.1 type II toxin-antitoxin system YoeB family toxin Toxin
NMK38_RS17820 (NIVACYA_03564) 3941471..3941725 - 255 WP_026785375.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NMK38_RS17825 (NIVACYA_03565) 3941951..3942424 - 474 WP_042157411.1 hypothetical protein -
NMK38_RS17830 (NIVACYA_03566) 3942512..3944251 - 1740 WP_254175603.1 solute carrier family 26 protein -
NMK38_RS17835 (NIVACYA_03567) 3944244..3944783 - 540 WP_042153957.1 rhodanese-like domain-containing protein -
NMK38_RS17840 (NIVACYA_03568) 3944887..3945486 - 600 Protein_3519 MBL fold metallo-hydrolase -
NMK38_RS17845 (NIVACYA_03569) 3945699..3946274 - 576 WP_254175604.1 Uma2 family endonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(8-37)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 6014.06 Da        Isoelectric Point: 10.2321

>T289962 WP_081693770.1 NZ_LR882934:c3941478-3941329 [Planktothrix agardhii]
MSNRILAWTDEAWDNYIYWQNQDRKTLKKINKIIKICPPYPSISRKFIL

Download         Length: 150 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9524.84 Da        Isoelectric Point: 6.0673

>AT289962 WP_026785375.1 NZ_LR882934:c3941725-3941471 [Planktothrix agardhii]
MKVVTFSEAKSQLKTVLDRVVEDADYTIITRRDADHAVVMSLDYFNGLLETVHLLKSPANAAHLERSIAQYRQGKALEHQ
LIDE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A1J1JAK8

References