Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/Gp49-HTH_37 |
Location | 2216585..2217453 | Replicon | chromosome |
Accession | NZ_LR882498 | ||
Organism | Mycobacterium tuberculosis variant microti strain Maus III isolate human |
Toxin (Protein)
Gene name | higB | Uniprot ID | P9WJA4 |
Locus tag | JN980_RS10170 | Protein ID | WP_010886136.1 |
Coordinates | 2216585..2216962 (+) | Length | 126 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | G0TLM0 |
Locus tag | JN980_RS10175 | Protein ID | WP_003409886.1 |
Coordinates | 2217004..2217453 (+) | Length | 150 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JN980_RS10120 | 2212374..2212826 | - | 453 | WP_003899095.1 | lipoprotein | - |
JN980_RS10125 | 2212890..2213291 | + | 402 | WP_003409869.1 | hypothetical protein | - |
JN980_RS10130 | 2213284..2213466 | - | 183 | WP_003409870.1 | hypothetical protein | - |
JN980_RS10135 | 2213580..2213930 | - | 351 | WP_003409871.1 | hypothetical protein | - |
JN980_RS10140 | 2213941..2214843 | - | 903 | WP_003409874.1 | hypothetical protein | - |
JN980_RS10145 | 2214864..2215055 | - | 192 | WP_003409876.1 | hypothetical protein | - |
JN980_RS10150 | 2215056..2215352 | - | 297 | WP_003409877.1 | hypothetical protein | - |
JN980_RS10155 | 2215592..2215807 | + | 216 | WP_003409878.1 | antitoxin | - |
JN980_RS10160 | 2215804..2216115 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
JN980_RS10165 | 2216089..2216610 | - | 522 | WP_003904745.1 | hypothetical protein | - |
JN980_RS10170 | 2216585..2216962 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | Toxin |
JN980_RS10175 | 2217004..2217453 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | Antitoxin |
JN980_RS10180 | 2217450..2217995 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
JN980_RS10185 | 2217884..2218498 | - | 615 | WP_003901296.1 | hypothetical protein | - |
JN980_RS10190 | 2218547..2218843 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
JN980_RS10195 | 2218840..2219091 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | - |
JN980_RS10200 | 2219078..2219572 | + | 495 | WP_003899099.1 | hypothetical protein | - |
JN980_RS10205 | 2219732..2220139 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
JN980_RS10210 | 2220143..2220415 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
JN980_RS10215 | 2220448..2221668 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14397.77 Da Isoelectric Point: 10.8862
>T289811 WP_010886136.1 NZ_LR882498:2216585-2216962 [Mycobacterium tuberculosis variant microti]
VPPPDPAAMGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI
VPPPDPAAMGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI
Download Length: 378 bp
Antitoxin
Download Length: 150 a.a. Molecular weight: 16760.16 Da Isoelectric Point: 8.0771
>AT289811 WP_003409886.1 NZ_LR882498:2217004-2217453 [Mycobacterium tuberculosis variant microti]
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA
Download Length: 450 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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