Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 596508..597307 Replicon chromosome
Accession NZ_LR882493
Organism Escherichia coli isolate 2016-17-292

Toxin (Protein)


Gene name yhaV Uniprot ID S1NYM6
Locus tag IHO92_RS02910 Protein ID WP_000347251.1
Coordinates 596508..596972 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag IHO92_RS02915 Protein ID WP_001307405.1
Coordinates 596972..597307 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHO92_RS02880 591509..591943 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
IHO92_RS02885 591961..592839 - 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
IHO92_RS02890 592829..593608 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
IHO92_RS02895 593619..594092 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
IHO92_RS02900 594115..595395 - 1281 WP_000681903.1 tagatose-bisphosphate aldolase subunit KbaZ -
IHO92_RS02905 595644..596453 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
IHO92_RS02910 596508..596972 - 465 WP_000347251.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
IHO92_RS02915 596972..597307 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
IHO92_RS02920 597456..599027 - 1572 WP_001273761.1 galactarate dehydratase -
IHO92_RS02925 599402..600736 + 1335 WP_000599652.1 galactarate/glucarate/glycerate transporter GarP -
IHO92_RS02930 600752..601522 + 771 WP_001058214.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17777.14 Da        Isoelectric Point: 9.4947

>T289637 WP_000347251.1 NZ_LR882493:c596972-596508 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT289637 WP_001307405.1 NZ_LR882493:c597307-596972 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CJ20

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References