Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 95647..96249 Replicon chromosome
Accession NZ_LR782232
Organism Escherichia coli isolate SC467

Toxin (Protein)


Gene name higB Uniprot ID U9XIS6
Locus tag HV361_RS00420 Protein ID WP_000897305.1
Coordinates 95938..96249 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag HV361_RS00415 Protein ID WP_000356397.1
Coordinates 95647..95937 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV361_RS00390 91573..92475 + 903 WP_000331377.1 formate dehydrogenase O subunit beta -
HV361_RS00395 92472..93107 + 636 WP_000829013.1 formate dehydrogenase cytochrome b556 subunit -
HV361_RS00400 93104..94033 + 930 WP_000027708.1 formate dehydrogenase accessory protein FdhE -
HV361_RS00405 94363..94605 - 243 WP_001086388.1 hypothetical protein -
HV361_RS00410 94824..95042 - 219 WP_001295676.1 ribbon-helix-helix domain-containing protein -
HV361_RS00415 95647..95937 - 291 WP_000356397.1 helix-turn-helix domain-containing protein Antitoxin
HV361_RS00420 95938..96249 - 312 WP_000897305.1 hypothetical protein Toxin
HV361_RS00425 96478..97386 + 909 WP_001162704.1 alpha/beta hydrolase -
HV361_RS00430 97450..98391 - 942 WP_001297068.1 fatty acid biosynthesis protein FabY -
HV361_RS00435 98436..98873 - 438 WP_000560983.1 D-tyrosyl-tRNA(Tyr) deacylase -
HV361_RS00440 98870..99742 - 873 WP_000920762.1 virulence factor BrkB family protein -
HV361_RS00445 99736..100335 - 600 WP_001295269.1 glucose-1-phosphatase -
HV361_RS00450 100434..101219 - 786 WP_038996806.1 DeoR/GlpR family DNA-binding transcription regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-85)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 12190.19 Da        Isoelectric Point: 9.7791

>T289329 WP_000897305.1 NZ_LR782232:c96249-95938 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Download         Length: 312 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10846.43 Da        Isoelectric Point: 10.8907

>AT289329 WP_000356397.1 NZ_LR782232:c95937-95647 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y7I7

Antitoxin

Source ID Structure

References