Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 3694227..3695026 Replicon chromosome
Accession NZ_LR778149
Organism Escherichia coli isolate SC487

Toxin (Protein)


Gene name yhaV Uniprot ID U9XVR9
Locus tag H1C96_RS17760 Protein ID WP_000347267.1
Coordinates 3694227..3694691 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag H1C96_RS17765 Protein ID WP_001307405.1
Coordinates 3694691..3695026 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H1C96_RS17730 3689228..3689662 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
H1C96_RS17735 3689680..3690558 - 879 WP_001380079.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
H1C96_RS17740 3690548..3691327 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
H1C96_RS17745 3691338..3691811 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
H1C96_RS17750 3691834..3693114 - 1281 WP_000681920.1 tagatose-bisphosphate aldolase subunit KbaZ -
H1C96_RS17755 3693363..3694172 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
H1C96_RS17760 3694227..3694691 - 465 WP_000347267.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
H1C96_RS17765 3694691..3695026 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
H1C96_RS17770 3695175..3696746 - 1572 WP_001273741.1 galactarate dehydratase -
H1C96_RS17775 3697121..3698455 + 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
H1C96_RS17780 3698471..3699241 + 771 WP_001058227.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17807.17 Da        Isoelectric Point: 9.4947

>T289239 WP_000347267.1 NZ_LR778149:c3694691-3694227 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT289239 WP_001307405.1 NZ_LR778149:c3695026-3694691 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0XTR4

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References