Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 4820033..4820635 Replicon chromosome
Accession NZ_LR778140
Organism Escherichia coli isolate SC406

Toxin (Protein)


Gene name higB Uniprot ID U9XIS6
Locus tag H1C94_RS23080 Protein ID WP_000897305.1
Coordinates 4820324..4820635 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag H1C94_RS23075 Protein ID WP_000356397.1
Coordinates 4820033..4820323 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H1C94_RS23050 4815958..4816860 + 903 WP_000331377.1 formate dehydrogenase O subunit beta -
H1C94_RS23055 4816857..4817492 + 636 WP_000829013.1 formate dehydrogenase cytochrome b556 subunit -
H1C94_RS23060 4817489..4818418 + 930 WP_000027708.1 formate dehydrogenase accessory protein FdhE -
H1C94_RS23065 4818748..4818990 - 243 WP_001087409.1 hypothetical protein -
H1C94_RS23070 4819210..4819428 - 219 WP_001315930.1 ribbon-helix-helix domain-containing protein -
H1C94_RS23075 4820033..4820323 - 291 WP_000356397.1 helix-turn-helix domain-containing protein Antitoxin
H1C94_RS23080 4820324..4820635 - 312 WP_000897305.1 hypothetical protein Toxin
H1C94_RS23085 4820864..4821772 + 909 WP_001162704.1 alpha/beta hydrolase -
H1C94_RS23090 4821836..4822777 - 942 WP_001297068.1 fatty acid biosynthesis protein FabY -
H1C94_RS23095 4822822..4823259 - 438 WP_000560983.1 D-tyrosyl-tRNA(Tyr) deacylase -
H1C94_RS23100 4823256..4824128 - 873 WP_000920762.1 virulence factor BrkB family protein -
H1C94_RS23105 4824122..4824721 - 600 WP_001295269.1 glucose-1-phosphatase -
H1C94_RS23110 4824820..4825605 - 786 WP_000059678.1 DeoR/GlpR family DNA-binding transcription regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-85)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 12190.19 Da        Isoelectric Point: 9.7791

>T289082 WP_000897305.1 NZ_LR778140:c4820635-4820324 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Download         Length: 312 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10846.43 Da        Isoelectric Point: 10.8907

>AT289082 WP_000356397.1 NZ_LR778140:c4820323-4820033 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y7I7

Antitoxin

Source ID Structure

References