Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tsbAT/-
Location 1170402..1171204 Replicon chromosome
Accession NZ_LR735432
Organism Staphylococcus epidermidis strain none isolate Se_RP62a-WT

Toxin (Protein)


Gene name tsbT Uniprot ID Q5HN83
Locus tag GOZ24_RS05870 Protein ID WP_002468490.1
Coordinates 1171025..1171204 (+) Length 60 a.a.

Antitoxin (Protein)


Gene name tsbA Uniprot ID Q5HN82
Locus tag GOZ24_RS05865 Protein ID WP_002456349.1
Coordinates 1170402..1171001 (+) Length 200 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GOZ24_RS05840 1165613..1167070 + 1458 WP_002440300.1 ABC transporter substrate-binding protein/permease -
GOZ24_RS05845 1167063..1167785 + 723 WP_001829838.1 amino acid ABC transporter ATP-binding protein -
GOZ24_RS05850 1168282..1168437 + 156 WP_001829854.1 hypothetical protein -
GOZ24_RS05855 1168647..1169777 + 1131 WP_001829814.1 tRNA epoxyqueuosine(34) reductase QueG -
GOZ24_RS05860 1169774..1170244 + 471 WP_001829836.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
GOZ24_RS05865 1170402..1171001 + 600 WP_002456349.1 glucosamine-6-phosphate isomerase Antitoxin
GOZ24_RS05870 1171025..1171204 + 180 WP_002468490.1 hypothetical protein Toxin
GOZ24_RS05875 1171360..1171764 + 405 WP_001829818.1 hypothetical protein -
GOZ24_RS05880 1171949..1173334 + 1386 WP_001829862.1 class II fumarate hydratase -
GOZ24_RS05885 1173695..1174519 - 825 WP_001829804.1 RluA family pseudouridine synthase -
GOZ24_RS05890 1174678..1175811 + 1134 WP_010959201.1 GAF domain-containing sensor histidine kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 1168282..1168437 155


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Glucosamine-6-phosphate isomerase

(130-195)


Sequences

Toxin        


Download         Length: 60 a.a.        Molecular weight: 6963.56 Da        Isoelectric Point: 4.3016

>T288881 WP_002468490.1 NZ_LR735432:1171025-1171204 [Staphylococcus epidermidis]
MANKKDSKLNYHEEENAMVTDLDDLKELGKEMEQISQENDEEKLNQSHDNEVRSDLKKQ

Download         Length: 180 bp

Antitoxin


Download         Length: 200 a.a.        Molecular weight: 22709.62 Da        Isoelectric Point: 4.9942

>AT288881 WP_002456349.1 NZ_LR735432:1170402-1171001 [Staphylococcus epidermidis]
MAMNFKVFDNSEKVAEYTADILRKQFNNNPTTIAGFHLSKEHAPVFDELKKNVENHTVDFSQINILDYDDNHSYYEALGV
PTGQIYSISYENDAIDFISDKIKTKENKGKLTMQVLTIDENGKLDISVRQGLMEAREIFLVITGANKRDMVEKLYRENGK
TSFEPSDLKAHRMVNVILDKEAAAGLPEDVKEYFTARFA

Download         Length: 600 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G7HY44

Antitoxin

Source ID Structure
AlphaFold DB A0A5E9LUD0

References