Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 149460..149995 Replicon plasmid 2
Accession NZ_LR135325
Organism Enterococcus faecium isolate E7654

Toxin (Protein)


Gene name yoeB Uniprot ID R2PQC0
Locus tag EQB39_RS15260 Protein ID WP_002314366.1
Coordinates 149460..149732 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID Q3Y220
Locus tag EQB39_RS15265 Protein ID WP_002297422.1
Coordinates 149732..149995 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EQB39_RS15225 145016..145659 + 644 Protein_144 transposase -
EQB39_RS15230 145735..146415 + 681 WP_002331383.1 IS6-like element IS1216 family transposase -
EQB39_RS15235 146470..146826 - 357 Protein_146 hypothetical protein -
EQB39_RS15240 147086..147634 - 549 WP_002292681.1 hypothetical protein -
EQB39_RS15245 147635..148492 - 858 WP_002292680.1 AAA family ATPase -
EQB39_RS15250 148778..149064 - 287 Protein_149 type II toxin-antitoxin system RelE/ParE family toxin -
EQB39_RS15255 149054..149383 - 330 WP_002292678.1 AbrB family transcriptional regulator -
EQB39_RS15260 149460..149732 - 273 WP_002314366.1 Txe/YoeB family addiction module toxin Toxin
EQB39_RS15265 149732..149995 - 264 WP_002297422.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EQB39_RS15270 150229..151137 + 909 Protein_153 IS982 family transposase -
EQB39_RS15275 151140..152315 - 1176 WP_002336205.1 MFS transporter -
EQB39_RS15280 152318..154567 - 2250 WP_002314387.1 alpha-galactosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..162848 162848
- inside IScluster/Tn - - 136036..160596 24560


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(9-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(5-69)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10780.24 Da        Isoelectric Point: 9.9724

>T288140 WP_002314366.1 NZ_LR135325:c149732-149460 [Enterococcus faecium]
MNNYSVMIKNSAKADLKKIKQSNLKPQFEKVIQTLKEDPYLPTQSFEKLKPTHEGRYSRRLNRQHRVVYKVDEDEHVVEI
YSARTHYESQ

Download         Length: 273 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9959.22 Da        Isoelectric Point: 4.5370

>AT288140 WP_002297422.1 NZ_LR135325:c149995-149732 [Enterococcus faecium]
MAKTVLNPSSARKNFYKLLKDVNENHTEIEIISERSENNAVLIGLDDWKAIKETLLLEQIGTLGVVRKREKDDSGFTNVD
EIDWDNL

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829F704

Antitoxin

Source ID Structure
AlphaFold DB A0A829F006

References