Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 3716554..3717095 Replicon chromosome
Accession NZ_LR134222
Organism Escherichia coli strain NCTC11129

Toxin (Protein)


Gene name yafQ Uniprot ID U9XPG0
Locus tag EL113_RS18330 Protein ID WP_000615976.1
Coordinates 3716817..3717095 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID S1EWQ0
Locus tag EL113_RS18325 Protein ID WP_000729704.1
Coordinates 3716554..3716814 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL113_RS18300 3712338..3713123 - 786 WP_000207575.1 putative lateral flagellar export/assembly protein LafU -
EL113_RS18305 3713095..3714807 + 1713 Protein_3530 flagellar biosynthesis protein FlhA -
EL113_RS18310 3714912..3715190 + 279 WP_000598760.1 type II toxin-antitoxin system HicA family toxin -
EL113_RS18315 3715183..3715539 + 357 WP_001030483.1 type II toxin-antitoxin system HicB family antitoxin -
EL113_RS18320 3715596..3716369 - 774 WP_000543895.1 C40 family peptidase -
EL113_RS18325 3716554..3716814 + 261 WP_000729704.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
EL113_RS18330 3716817..3717095 + 279 WP_000615976.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
EL113_RS18335 3717251..3717991 + 741 WP_001225679.1 murein L,D-transpeptidase -
EL113_RS18340 3717962..3718729 - 768 WP_000333380.1 class II glutamine amidotransferase -
EL113_RS18345 3718935..3719513 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-84)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10800.59 Da        Isoelectric Point: 10.0702

>T287137 WP_000615976.1 NZ_LR134222:3716817-3717095 [Escherichia coli]
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>AT287137 WP_000729704.1 NZ_LR134222:3716554-3716814 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9XPG0

Antitoxin

Source ID Structure
PDB 4ML0
AlphaFold DB A0A0E0Y6Z6

References