Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 593225..594024 Replicon chromosome
Accession NZ_LR134222
Organism Escherichia coli strain NCTC11129

Toxin (Protein)


Gene name yhaV Uniprot ID F4VJD3
Locus tag EL113_RS02945 Protein ID WP_000347266.1
Coordinates 593225..593689 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag EL113_RS02950 Protein ID WP_001307405.1
Coordinates 593689..594024 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL113_RS02915 588226..588660 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
EL113_RS02920 588678..589556 - 879 WP_001315856.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
EL113_RS02925 589546..590325 - 780 WP_000406214.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
EL113_RS02930 590336..590809 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
EL113_RS02935 590832..592112 - 1281 WP_000681921.1 tagatose-bisphosphate aldolase subunit KbaZ -
EL113_RS02940 592361..593170 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
EL113_RS02945 593225..593689 - 465 WP_000347266.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
EL113_RS02950 593689..594024 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
EL113_RS02955 594173..595744 - 1572 WP_001273741.1 galactarate dehydratase -
EL113_RS02960 596119..597453 + 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
EL113_RS02965 597469..598239 + 771 WP_001058227.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17841.18 Da        Isoelectric Point: 9.4947

>T287123 WP_000347266.1 NZ_LR134222:c593689-593225 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRFFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT287123 WP_001307405.1 NZ_LR134222:c594024-593689 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A836NGD2

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References