Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 3634837..3635378 Replicon chromosome
Accession NZ_LR134216
Organism Escherichia coli strain NCTC10973

Toxin (Protein)


Gene name yafQ Uniprot ID Q47149
Locus tag EL103_RS17660 Protein ID WP_000615983.1
Coordinates 3635100..3635378 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID Q47150
Locus tag EL103_RS17655 Protein ID WP_000729703.1
Coordinates 3634837..3635097 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL103_RS17640 3630888..3632981 + 2094 WP_001140826.1 flagellar biosynthesis protein FlhA -
EL103_RS17645 3633205..3633702 - 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
EL103_RS17650 3633878..3634627 - 750 WP_113402119.1 C40 family peptidase -
EL103_RS17655 3634837..3635097 + 261 WP_000729703.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
EL103_RS17660 3635100..3635378 + 279 WP_000615983.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
EL103_RS17665 3635534..3636274 + 741 WP_001225679.1 murein L,D-transpeptidase -
EL103_RS17670 3636245..3637012 - 768 WP_000333380.1 class II glutamine amidotransferase -
EL103_RS17675 3637218..3637796 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - gmhA/lpcA / clpV/tssH / tssA / tssA / hcp1/tssD1 3633878..3660623 26745


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10846.62 Da        Isoelectric Point: 9.9941

>T287101 WP_000615983.1 NZ_LR134216:3635100-3635378 [Escherichia coli]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9405.80 Da        Isoelectric Point: 5.0758

>AT287101 WP_000729703.1 NZ_LR134216:3634837-3635097 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4Q2U

Antitoxin

Source ID Structure
PDB 4Q2U
AlphaFold DB A0A5F1F716

References