Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
Location | 3679829..3680370 | Replicon | chromosome |
Accession | NZ_LR134152 | ||
Organism | Escherichia coli strain NCTC9104 |
Toxin (Protein)
Gene name | yafQ | Uniprot ID | Q47149 |
Locus tag | EL040_RS18000 | Protein ID | WP_000615983.1 |
Coordinates | 3680092..3680370 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | dinJ | Uniprot ID | Q47150 |
Locus tag | EL040_RS17995 | Protein ID | WP_000729703.1 |
Coordinates | 3679829..3680089 (+) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EL040_RS17975 | 3675503..3676289 | - | 787 | Protein_3499 | putative lateral flagellar export/assembly protein LafU | - |
EL040_RS17980 | 3676261..3677973 | + | 1713 | Protein_3500 | flagellar biosynthesis protein FlhA | - |
EL040_RS17985 | 3678197..3678694 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
EL040_RS17990 | 3678870..3679619 | - | 750 | WP_000056849.1 | C40 family peptidase | - |
EL040_RS17995 | 3679829..3680089 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
EL040_RS18000 | 3680092..3680370 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
EL040_RS18005 | 3680526..3681266 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
EL040_RS18010 | 3681237..3682004 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
EL040_RS18015 | 3682210..3682788 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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