Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HTH_XRE |
Location | 3745157..3745836 | Replicon | chromosome |
Accession | NZ_LR130545 | ||
Organism | Escherichia coli strain B36 isolate B36 |
Toxin (Protein)
Gene name | higB | Uniprot ID | S1PK60 |
Locus tag | EW036_RS18970 | Protein ID | WP_000057523.1 |
Coordinates | 3745534..3745836 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | S1QAY3 |
Locus tag | EW036_RS18965 | Protein ID | WP_000806442.1 |
Coordinates | 3745157..3745498 (-) | Length | 114 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EW036_RS18955 | 3741401..3742333 | - | 933 | WP_000883041.1 | glutaminase A | - |
EW036_RS18960 | 3742595..3745099 | + | 2505 | WP_000083947.1 | copper-exporting P-type ATPase CopA | - |
EW036_RS18965 | 3745157..3745498 | - | 342 | WP_000806442.1 | HigA family addiction module antidote protein | Antitoxin |
EW036_RS18970 | 3745534..3745836 | - | 303 | WP_000057523.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EW036_RS18975 | 3745969..3746763 | + | 795 | WP_000365147.1 | TraB/GumN family protein | - |
EW036_RS18980 | 3746967..3747446 | + | 480 | WP_000186633.1 | Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK | - |
EW036_RS18985 | 3747470..3748270 | + | 801 | WP_000439798.1 | hypothetical protein | - |
EW036_RS18990 | 3748267..3748770 | + | 504 | WP_000667000.1 | hypothetical protein | - |
EW036_RS18995 | 3748808..3750460 | - | 1653 | WP_000771748.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11809.44 Da Isoelectric Point: 10.3980
>T286364 WP_000057523.1 NZ_LR130545:c3745836-3745534 [Escherichia coli]
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY
Download Length: 303 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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